Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q6PDQ2 | Chd4 | ATP-dependent chromatin remodeler CHD4 (EC … | Mus musculus (Mouse) | 1915 aa |
Protein Details: Q6PDQ2 (Chd4)
Protein Information
| Accession | Q6PDQ2 |
|---|---|
| Protein Names | ATP-dependent chromatin remodeler CHD4 (EC 3.6.4.-) (Chromo domain-containing protein 4) (CHD-4) |
| Gene Symbol | Chd4 |
| Organism | Mus musculus (Mouse) |
| Length | 1915 aa |
| Isoforms | No isoforms |
| Related PMIDs | 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MASGLGSPSP11CSAGSEEEDM21DALLNNSLPP31PHPENEEDPD41EDLSEAETPK
51-10051LKKKKKPKKP61RDPKIPKSKR71QKKELGDSSG81EGPEFVEEEE91EVALRSDSEG
101-150101SDYTPGKKKK111KKLGPKKEKK121SKSKRKEEEE131EEDEDDDSKE141PKSSAQLLED
151-200151WGMEDIDHVF161SEEDYRTLTN171YKAFSQFVRP181LIAAKNPKIA191VSKMMMVLGA
201-250201KWREFSTNNP211FKGSSGASVA221AAAAAAVAVV231ESMVTATEVA241PPPPPVEVPI
251-300251RKAKTKEGKG261PNARRKPKGS271PRVPDAKKPK281PKKVAPLKIK291LGGFGSKRKR
301-350301SSSEDDDLDV311ESDFDDASIN321SYSVSDGSTS331RSSRSRKKLR341TAKKKKKGEE
351-400351EVTAVDGYET361DHQDYCEVCQ371QGGEIILCDT381CPRAYHMVCL391DPDMEKAPEG
401-450401KWSCPHCEKE411GIQWEAKEDN421SEGEEILEEV431GGDPEEEDDH441HMEFCRVCKD
451-500451GGELLCCDTC461PSSYHIHCLN471PPLPEIPNGE481WLCPRCTCPA491LKGKVQKILI
501-550501WKWGQPPSPT511PVPRPPDADP521NTPSPKPLEG531RPERQFFVKW541QGMSYWHCSW
551-600551VSELQLELHC561QVMFRNYQRK571NDMDEPPSGD581FGGDEEKSRK591RKNKDPKFAE
601-650601MEERFYRYGI611KPEWMMIHRI621LNHSVDKKGH631VHYLIKWRDL641PYDQASWESE
651-700651DVEIQDYDLF661KQSYWNHREL671MRGEEGRPGK681KLKKVKLRKL691ERPPETPTVD
701-750701PTVKYERQPE711YLDATGGTLH721PYQMEGLNWL731RFSWAQGTDT741ILADEMGLGK
751-800751TVQTAVFLYS761LYKEGHSKGP771FLVSAPLSTI781INWEREFEMW791APDMYVVTYV
801-850801GDKDSRAIIR811ENEFSFEDNA821IRGGKKASRM831KKEASVKFHV841LLTSYELITI
851-900851DMAILGSIDW861ACLIVDEAHR871LKNNQSKFFR881VLNGYSLQHK891LLLTGTPLQN
901-950901NLEELFHLLN911FLTPERFHNL921EGFLEEFADI931AKEDQIKKLH941DMLGPHMLRR
951-1000951LKADVFKNMP961SKTELIVRVE971LSPMQKKYYK981YILTRNFEAL991NARGGGNQVS
1001-10501001LLNVVMDLKK1011CCNHPYLFPV1021AAMEAPKMPN1031GMYDGSALIR1041ASGKLLLLQK
1051-11001051MLKNLKEGGH1061RVLIFSQMTK1071MLDLLEDFLE1081HEGYKYERID1091GGITGNMRQE
1101-11501101AIDRFNAPGA1111QQFCFLLSTR1121AGGLGINLAT1131ADTVIIYDSD1141WNPHNDIQAF
1151-12001151SRAHRIGQNK1161KVMIYRFVTR1171ASVEERITQV1181AKKKMMLTHL1191VVRPGLGSKT
1201-12501201GSMSKQELDD1211ILKFGTEELF1221KDEATDGGGD1231NKEGEDSSVI1241HYDDKAIERL
1251-13001251LDRNQDETED1261TELQGMNEYL1271SSFKVAQYVV1281REEEMGEEEE1291VEREIIKQEE
1301-13501301SVDPDYWEKL1311LRHHYEQQQE1321DLARNLGKGK1331RIRKQVNYND1341GSQEDRDWQD
1351-14001351DQSDNQSDYS1361VASEEGDEDF1371DERSEAPRRP1381SRKGLRNDKD1391KPLPPLLARV
1401-14501401GGNIEVLGFN1411ARQRKAFLNA1421IMRYGMPPQD1431AFTTQWLVRD1441LRGKSEKEFK
1451-15001451AYVSLFMRHL1461CEPGADGAET1471FADGVPREGL1481SRQHVLTRIG1491VMSLIRKKVQ
1501-15501501EFEHVNGRWS1511MPELAEVEEN1521KKMSQPGSPS1531PKTPTPSTPG1541DTQPNTPAPV
1551-16001551PPAEDGIKIE1561ENSLKEEEST1571EGEKEVKSTA1581PEATVECAQP1591PAPAPATAPA
1601-16501601TATAPEDDKA1611PAEPPEGEEK1621VEKAEVKERT1631EEPMETEAKG1641TTEVEKVEEK
1651-17001651SAVDLTPIVV1661EDKEEKKEEE1671EKKDVMLQNG1681ETPKDLSDEK1691QKKNSKQRFM
1701-17501701FNIADGGFTE1711LHSLWQNEER1721AATVTKKTYE1731IWHRRHDYWL1741LAGIINHGYA
1751-18001751RWQDIQNDPR1761YAILNEPFKG1771EMNRGNFLEI1781KNKFLARRFK1791LLEQALVIEE
1801-18501801QLRRAAYLNM1811SEDPSHPSMA1821LNTRFAEVEC1831LAESHQHLSK1841ESMAGNKPAN
1851-19001851AVLHKVLKQL1861EELLSDMKAD1871VTRLPATIAR1881IPPVAVRLQM1891SERNILSRLA
1901-19151901NRAPEPPPQQ1911VAQQQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 11 | - | - | - |
Deep-Palm: 0.07
|
|
| 366 | - | - | - |
Deep-Palm: 0.02
|
|
| 369 | - | - | - |
Deep-Palm: 0.02
|
|
| 378 | - | - | - |
Deep-Palm: 0.02
|
|
| 381 | - | - | - |
Deep-Palm: 0.03
|
|
| 389 | - | - | - |
Deep-Palm: 0.06
|
|
| 404 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.17
|
|
| 407 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.11
|
|
| 445 | - | - | - |
Deep-Palm: 0.03
|
|
| 448 | - | - | - |
Deep-Palm: 0.02
|
|
| 456 | - | - | - |
Deep-Palm: 0.01
|
|
| 457 | - | - | - |
Deep-Palm: 0.02
|
|
| 460 | - | - | - |
Deep-Palm: 0.04
|
|
| 468 | - | - | - |
Deep-Palm: 0.02
|
|
| 483 | - | - | - |
Deep-Palm: 0.74
|
|
| 486 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.74
|
|
| 488 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.59
|
|
| 548 | - | - | - |
Deep-Palm: 0.03
|
|
| 560 | - | - | - |
Deep-Palm: 0.03
|
|
| 862 | - | - | - |
Deep-Palm: 0.91
|
|
| 1011 | - | - | - |
Deep-Palm: 0.20
|
|
| 1012 | - | - | - |
Deep-Palm: 0.16
|
|
| 1114 | - | - | - |
Deep-Palm: 0.95
|
|
| 1461 | - | - | - |
Deep-Palm: 0.90
|
|
| 1587 | - | - | - |
Deep-Palm: 0.93
|
|
| 1830 | - | - | - |
Deep-Palm: 0.74
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Liver
Specificity: 0.250
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
9
Brain tissue (Mass)
Specificity: 0.750
9/56 (16.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.