Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q6U7R4 | Timd4 | T-cell immunoglobulin and mucin domain-containing … | Mus musculus (Mouse) | 343 aa |
Protein Details: Q6U7R4 (Timd4)
Protein Information
| Accession | Q6U7R4 |
|---|---|
| Protein Names | T-cell immunoglobulin and mucin domain-containing protein 4 (TIMD-4) (Spleen, mucin-containing, knockout of lymphotoxin protein) (SMUCKLER) (T-cell immunoglobulin mucin receptor 4) (TIM-4) (T-cell membrane protein 4) |
| Gene Symbol | Timd4 |
| Organism | Mus musculus (Mouse) |
| Length | 343 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSKGLLLLWL11VTELWWLYLT21PAASEDTIIG31FLGQPVTLPC41HYLSWSQSRN
51-10051SMCWGKGSCP61NSKCNAELLR71TDGTRIISRK81STKYTLLGKV91QFGEVSLTIS
101-150101NTNRGDSGVY111CCRIEVPGWF121NDVKKNVRLE131LRRATTTKKP141TTTTRPTTTP
151-200151YVTTTTPELL161PTTVMTTSVL171PTTTPPQTLA181TTAFSTAVTT191CPSTTPGSFS
201-250201QETTKGSAFT211TESETLPASN221HSQRSMMTIS231TDIAVLRPTG241SNPGILPSTS
251-300251QLTTQKTTLT261TSESLQKTTK271SHQINSRQTI281LIIACCVGFV291LMVLLFLAFL
301-343301LRGKVTGANC311LQRHKRPDNT321EDSDSVLNDM331SHGRDDEDGI341FTL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 40 | Immunoglobulin-like fold Immunoglobulin-like domain superfamily T-CELL IMMUNOGLOBULIN AND MUCIN DOMAIN-CONTAINING PROTEIN 4 | - | - |
Deep-Palm: 0.08
|
|
| 53 | - | - | - |
Deep-Palm: 0.06
|
|
| 59 | - | - | - |
Deep-Palm: 0.31
|
|
| 64 | - | - | - |
Deep-Palm: 0.25
|
|
| 111 | - | - | - |
Deep-Palm: 0.18
|
|
| 112 | - | - | - |
Deep-Palm: 0.16
|
|
| 191 | - | - | - |
Deep-Palm: 0.79
|
|
| 285 | - | - | - |
Deep-Palm: 0.32
|
|
| 286 | - | - | - |
Deep-Palm: 0.40
|
|
| 310 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.95
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Liver
Specificity: 1.000
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.