Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q78PY7 | Snd1 | Staphylococcal nuclease domain-containing protein 1 … | Mus musculus (Mouse) | 910 aa |
Protein Details: Q78PY7 (Snd1)
Protein Information
| Accession | Q78PY7 |
|---|---|
| Protein Names | Staphylococcal nuclease domain-containing protein 1 (EC 3.1.31.1) (100 kDa coactivator) (p100 co-activator) |
| Gene Symbol | Snd1 |
| Organism | Mus musculus (Mouse) |
| Length | 910 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 34884899 35358180 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MASSAQSSGS11SGGPAVPTVQ21RGIVKMVLSG31CAIIVRGQPR41GGPPPERQIN
51-10051LSNIRAGNLA61RRAAATQPDG71KDTPDEPWAF81PAREFLRKKL91IGKEVCFTIE
101-150101NKTPQGREYG111MIYLGKDTNG121ENIAESLVAE131GLATRREGMR141ANNPEQNRLS
151-200151ECEEQAKASK161KGMWSEGNGS171HTIRDLKYTI181ENPRHFVDSH191HQKPVNAIIE
201-250201HVRDGSVVRA211LLLPGHHLVT221VMLSGIKCPT231FRRETDGSET241PEPFAAEAKF
251-300251FTESRLLQRD261VQIILESCHN271QNLLGTILHP281NGNITELLLK291EGFARCVDWS
301-350301IAVYTRGAEK311LRAAERFAKE321RRLRIWRDYV331PPTANLDQKD341KQFVAKVMQV
351-400351LNADAIVVKL361NSGDYKTIHL371SSIRPPRLEG381DNIQDKNKKL391RPLYDIPYMF
401-450401EAREFLRKKL411IGKKVNVTVD421YIRPASPATE431TVPAFSERTC441ATVTIGGINI
451-500451AEALVSKGLA461TVIRYRQDDD471QRSSHYDELL481AAEARAIKNG491KGLHSKKEVP
501-550501IHRVADISGD511TQKAKQFLPF521LQRAGRSEAV531VEYVFSGSRL541KLYLPKETCL
551-600551ITFLLAGIEC561PRGARNLPGL571VQEGEPFSEE581ATLFTKELVL591QREVEVEVES
601-650601MDKAGNFIGW611LHMDGANLSV621LLVEQALSKV631HFTAERSAYY641KPLLSAEEAA
651-700651KQRKEKVWAH661YEERPVEEVM671PVLEEKERSA681SYKPVFVTEI691TDDLHFYVQD
701-750701VETGTQLEKL711MENMRNDISS721HPPVEGSYAP731RRGEFCIAKF741VDGEWYRARV
751-800751EKVESPAKVH761VFYIDYGNRE771ILPSTRLGTL781PPAFSTRVLP791AQATEYAFAF
801-850801IQVPQDEDAR811TDAVDSVVRD821IQNTQCLLNV831EHLSASCPHV841TLQFADSKGD
851-900851VGLGLVKEGL861VMVEVRKEKQ871FQKVITEYLN881AQESAKSARL891NLWRYGDFRA
901-910901DDADEFGYSR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 31 | SNase-like, OB-fold superfamily | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.94
|
|
| 96 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
MLE
(39008777)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.96
|
| 152 | Staphylococcal nuclease homologue |
Brain
(34200797)
| - |
Deep-Palm: 0.81
|
|
| 228 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.77
|
|
| 268 | - | - | - |
Deep-Palm: 0.77
|
|
| 296 | - | - | - |
Deep-Palm: 0.98
|
|
| 440 | - | - | - |
Deep-Palm: 0.95
|
|
| 549 | - | - | - |
Deep-Palm: 0.98
|
|
| 560 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 736 | Tudor domain |
Brain
(34200797)
| - |
Deep-Palm: 0.33
|
|
| 826 | - | - | - |
Deep-Palm: 0.31
|
|
| 837 | - | - | - |
Deep-Palm: 0.49
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
6
Liver
Specificity: 0.600
6/6 (100.0%)
4
Brain
Specificity: 0.400
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.