Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q7KZF4 | SND1 | Staphylococcal nuclease domain-containing protein 1 … | Homo sapiens (Human) | 910 aa |
Protein Details: Q7KZF4 (SND1)
Protein Information
| Accession | Q7KZF4 |
|---|---|
| Protein Names | Staphylococcal nuclease domain-containing protein 1 (EC 3.1.31.1) (100 kDa coactivator) (EBNA2 coactivator p100) (Tudor domain-containing protein 11) (p100 co-activator) |
| Gene Symbol | SND1 |
| Organism | Homo sapiens (Human) |
| Length | 910 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31251020 31382980 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MASSAQSGGS11SGGPAVPTVQ21RGIIKMVLSG31CAIIVRGQPR41GGPPPERQIN
51-10051LSNIRAGNLA61RRAAATQPDA71KDTPDEPWAF81PAREFLRKKL91IGKEVCFTIE
101-150101NKTPQGREYG111MIYLGKDTNG121ENIAESLVAE131GLATRREGMR141ANNPEQNRLS
151-200151ECEEQAKAAK161KGMWSEGNGS171HTIRDLKYTI181ENPRHFVDSH191HQKPVNAIIE
201-250201HVRDGSVVRA211LLLPDYYLVT221VMLSGIKCPT231FRREADGSET241PEPFAAEAKF
251-300251FTESRLLQRD261VQIILESCHN271QNILGTILHP281NGNITELLLK291EGFARCVDWS
301-350301IAVYTRGAEK311LRAAERFAKE321RRLRIWRDYV331APTANLDQKD341KQFVAKVMQV
351-400351LNADAIVVKL361NSGDYKTIHL371SSIRPPRLEG381ENTQDKNKKL391RPLYDIPYMF
401-450401EAREFLRKKL411IGKKVNVTVD421YIRPASPATE431TVPAFSERTC441ATVTIGGINI
451-500451AEALVSKGLA461TVIRYRQDDD471QRSSHYDELL481AAEARAIKNG491KGLHSKKEVP
501-550501IHRVADISGD511TQKAKQFLPF521LQRAGRSEAV531VEYVFSGSRL541KLYLPKETCL
551-600551ITFLLAGIEC561PRGARNLPGL571VQEGEPFSEE581ATLFTKELVL591QREVEVEVES
601-650601MDKAGNFIGW611LHIDGANLSV621LLVEHALSKV631HFTAERSSYY641KSLLSAEEAA
651-700651KQKKEKVWAH661YEEQPVEEVM671PVLEEKERSA681SYKPVFVTEI691TDDLHFYVQD
701-750701VETGTQLEKL711MENMRNDIAS721HPPVEGSYAP731RRGEFCIAKF741VDGEWYRARV
751-800751EKVESPAKIH761VFYIDYGNRE771VLPSTRLGTL781SPAFSTRVLP791AQATEYAFAF
801-850801IQVPQDDDAR811TDAVDSVVRD821IQNTQCLLNV831EHLSAGCPHV841TLQFADSKGD
851-900851VGLGLVKEGL861VMVEVRKEKQ871FQKVITEYLN881AQESAKSARL891NLWRYGDFRA
901-910901DDADEFGYSR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 31 | SNase-like, OB-fold superfamily | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.92
|
|
| 96 | SWISSPALM DBPTM CYSMODDB | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.96
|
| 152 | - | - | - |
Deep-Palm: 0.85
|
|
| 228 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.92
|
|
| 268 | - | - | - |
Deep-Palm: 0.60
|
|
| 296 | - | - | - |
GPS-Palm: 0.71
Deep-Palm: 0.98
|
|
| 440 | SWISSPALM DBPTM CYSMODDB | - |
HeLa
(29575903)
| - |
Deep-Palm: 0.95
|
| 549 | - | - | - |
GPS-Palm: 0.73
Deep-Palm: 0.98
|
|
| 560 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 736 | SWISSPALM DBPTM CYSMODDB | Tudor domain | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.32
|
| 826 | - | - | - |
Deep-Palm: 0.43
|
|
| 837 | - | - | - |
Deep-Palm: 0.64
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.429
3
LNCaP
Specificity: 0.429
3/3 (100.0%)
2
HAP1 cell
Specificity: 0.286
2/2 (100.0%)
1
U937 cell
Specificity: 0.143
1/1 (100.0%)
1
293T cell
Specificity: 0.143
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 275 | G → C | 0.002020 | SNP | Missense Mutation | PRAD |
| 391 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 391 | R → C | 0.004219 | SNP | Missense Mutation | SARC |
| 438 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 465 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 560 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 715 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 746 | Y → C | 0.003559 | SNP | Missense Mutation | KIRP |
| 747 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 894 | R → C | 0.002288 | SNP | Missense Mutation | STAD |