Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q80UJ7 | Rab3gap1 | Rab3 GTPase-activating protein catalytic subunit … | Mus musculus (Mouse) | 981 aa |
Protein Details: Q80UJ7 (Rab3gap1)
Protein Information
| Accession | Q80UJ7 |
|---|---|
| Protein Names | Rab3 GTPase-activating protein catalytic subunit (RAB3 GTPase-activating protein 130 kDa subunit) (Rab3-GAP p130) (Rab3-GAP) |
| Gene Symbol | Rab3gap1 |
| Organism | Mus musculus (Mouse) |
| Length | 981 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAADSEPESE11VFEITDFTTA21SEWERFISKV31EEVLNDWKLI41GPSLGKPLEK
51-10051GIFTSGTWEE61RSDEISFADF71RFSVTHHYLV81QESPDKERKD91EELEDAIPQS
101-150101MQDLLCMNND111FPPRAHCLVR121WYGLREFVVI131APAAHSDAVL141SESKCNLLLS
151-200151SISIALGNTG161CQVPLFVQIH171HKWRRMYMGE181CQGPGVRTDF191EMVHLRKVPS
201-250201QYTHLSGLLD211IFKSKIGCPL221TPLPPVSIAI231RLTYVLQDWQ241QYFWPQQPPD
251-300251IDALVGGEVG261GLEFGKLPFG271ACEDPISELH281LATTWPHLTE291GIIVDNDVYS
301-350301DLDPVQAPHW311SVRVRKADNP321QCLLGDFVTE331FLKICRRKES341TDEILGRSTF
351-400351EEEGREVADI361THALSKLTEP371APVPIHKLSV381SNMVHTAKKK391IRKHRGEESP
401-450401LNSDVLNTIL411LFLFPDAVSE421KPLDGTTSID431NSIPAPEAGD441YTLYNQFKSA
451-500451PSDSLTYKLA461LCLCMINFYH471GGLKGVAHLW481QEFVLEMRFR491WENNFLIPGL
501-550501ASGSPDLRCC511LLHQKLQMLN521CCIERKKARD531EGKKTSLSDS541TTSAYPGDAG
551-600551KTGGQLGLDH561LRDTEKEKGE571VGKSWDSWSD581SEEEFFECLS591DTEDLKGNGQ
601-650601ESGKKGGPKE611MANLKPEGRL621HQHGKLTLLH631NGEPLYIPVT641QEPAPMTEDL
651-700651LEEQSEVLAK661LGTSAEGAHL671RARMQSACLL681SDMESFKAAN691PGCFLEDFVR
701-750701WYSPRDYIEE711EVTDEKGNVV721LKGELSARMK731IPSNMWVEAW741ETAKPVPARR
751-800751QRRLFDDTRE761AEKVLHYLAM771QKPADLARHL781LPCVIHAAVL791KVKEEESLEN
801-850801IPSVKKIIKQ811IIAHSSKVLH821FPNPEDKKLE831EIILQITTVE841AIIARARSLK
851-900851AKFGTEKCEH861EEEKEGLERF871VSCLLEQPEV881SVTGAGRGHA891GRIIHKLFVN
901-950901AQRAAAVALP911EEELKKSGCP921EERRQTLVSD931FPPPAGRELI941LRATVPRPAP
951-981951YSKALPQRMY961SVLTKEDFRL971AGAFSSDTSF981F
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 106 | - | - | - |
Deep-Palm: 0.27
|
|
| 117 | - | - | - |
Deep-Palm: 0.37
|
|
| 145 | - | - | - |
Deep-Palm: 0.95
|
|
| 161 | - | - | - |
Deep-Palm: 0.74
|
|
| 181 | - | - | - |
Deep-Palm: 0.10
|
|
| 218 | - | - | - |
Deep-Palm: 0.96
|
|
| 272 | - | - | - |
Deep-Palm: 0.93
|
|
| 322 | - | - | - |
Deep-Palm: 0.88
|
|
| 335 | - | - | - |
Deep-Palm: 0.85
|
|
| 462 | - | - | - |
Deep-Palm: 0.91
|
|
| 464 | - | - | - |
Deep-Palm: 0.63
|
|
| 509 | - | - | - |
Deep-Palm: 0.58
|
|
| 510 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.76
|
|
| 521 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.86
|
|
| 522 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.90
|
|
| 588 | - | - | - |
Deep-Palm: 0.64
|
|
| 678 | SWISSPALM DBPTM CYSMODDB | Rab3 GTPase-activating protein catalytic subunit |
Forebrain
(28680068)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.87
|
| 693 | - |
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.18
|
|
| 783 | - | - | - |
Deep-Palm: 0.98
|
|
| 858 | - | - | - |
Deep-Palm: 0.98
|
|
| 873 | - |
brain
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.97
|
|
| 919 | - | - | - |
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
3
Liver
Specificity: 0.300
3/3 (100.0%)
1
Brain
Specificity: 0.100
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 0.600
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.