Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q80VL1 | Tdrkh | Tudor and KH domain-containing protein … | Mus musculus (Mouse) | 560 aa |
Protein Details: Q80VL1 (Tdrkh)
Protein Information
| Accession | Q80VL1 |
|---|---|
| Protein Names | Tudor and KH domain-containing protein (Tudor domain-containing protein 2) |
| Gene Symbol | Tdrkh |
| Organism | Mus musculus (Mouse) |
| Length | 560 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34200797 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSTERTSWTN11LSTIQKIALG21LGIPASATVA31YILYRRYRES41REERLTFVGE
51-10051DDIEIEMRVP61QEAVKLIIGR71QGANIKQLRK81QTGARIDVDT91EDVGDERVLL
101-150101ISGFPVQVCK111AKAAIHQILT121ENTPVFEQLS131VPQRSVGRII141GRGGETIRSI
151-200151CKASGAKITC161DKESEGTLLL171SRLIKISGTQ181KEVAAAKHLI191LEKVSEDEEL
201-250201RKRIAHSAET211RVPRKQPISV221RREEVTEPGG231AGEAALWKNT241NSSMGPATPL
251-300251EVPLRKGGGD261MVVVGPKEGS271WEKPNDDSFQ281NSGAQSSPET291SMFEIPSPDF
301-350301SFHADEYLEV311YVSASEHPNH321FWIQIIGSRS331LQLDKLVSEM341TQHYENSLPE
351-400351DLTVHVGDIV361AAPLSTNGSW371YRARVLGTLE381NGNLDLYFVD391FGDNGDCALK
401-450401DLRALRSDFL411SLPFQAIECS421LARIAPTGEE431WEEEALDEFD441RLTHCADWKP
451-500451LVAKISSYVQ461TGISTWPKIY471LYDTSDEKKL481DIGLELVRKG491YAVELPEDME
501-550501ENRTVPNMLK511DMATETDDSL521ASILTETKKS531PEEMPHTLSC541LSLSEAASMS
551-560551GDDNLEDDLF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 109 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.93
|
| 151 | - | - | - |
Deep-Palm: 0.95
|
|
| 160 | KH domain |
Brain
(34200797)
| - |
Deep-Palm: 0.98
|
|
| 397 | - | - | - |
Deep-Palm: 0.89
|
|
| 419 | - | - | - |
Deep-Palm: 0.96
|
|
| 445 | - | - | - |
Deep-Palm: 0.85
|
|
| 540 | - | - | - |
Deep-Palm: 0.92
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Brain
Specificity: 0.200
2/2 (100.0%)
1
Liver
Specificity: 0.100
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
7
Brain tissue (Mass)
Specificity: 0.700
7/56 (12.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.