Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q810A7 | Ddx42 | ATP-dependent RNA helicase DDX42 (EC … | Mus musculus (Mouse) | 929 aa |
Protein Details: Q810A7 (Ddx42)
Protein Information
| Accession | Q810A7 |
|---|---|
| Protein Names | ATP-dependent RNA helicase DDX42 (EC 3.6.4.13) (DEAD box protein 42) |
| Gene Symbol | Ddx42 |
| Organism | Mus musculus (Mouse) |
| Length | 929 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31772009 35477839 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MNWNKGGPGT11KRGFGFGGFA21ISAGKKEEAK31LPQQSHSAFG41AASSSSGFGK
51-10051SAPPQLPSFY61KIGSKRANFD71EENAYFEDEE81EDSSNVDLPY91IPAENSPTRQ
101-150101QFHSKPADSD111SDDDPLEAFM121AEVEDQAARD131MKRLEEKDKE141RKNVKGIRDD
151-200151IEEEDDQEAY161FRYMAENPTA171GVVQEEEEDN181LEYDSDGNPI191APSKKIIDPL
201-250201PPIDHSEIDY211PPFEKNFYNE221HEEITNLTPQ231QLIDLRHKLN241LRVSGAAPPR
251-300251PGSSFAHFGF261DEQLMHQIRK271SEYTQPTPIQ281CQGVPVALSG291RDMIGIAKTG
301-350301SGKTAAFIWP311MLIHIMDQKE321LEPGDGPIAV331IVCPTRELCQ341QIHAECKRFG
351-400351KAYNLRSVAV361YGGGSMWEQA371KALQEGAEIV381VCTPGRLIDH391VKKKATNLQR
401-450401VSYLVFDEAD411RMFDMGFEYQ421VRSIASHVRP431DRQTLLFSAT441FRKKIEKLAR
451-500451DILIDPIRVV461QGDIGEANED471VTQIVEILHS481GPSKWNWLTR491RLVEFTSSGS
501-550501VLLFVTKKAN511AEELASNLKQ521EGHNLGLLHG531DMDQSERNKV541ISDFKKKDIP
551-600551VLVATDVAAR561GLDIPSIKTV571INYDVARDID581THTHRIGRTG591RAGEKGVAYT
601-650601LLTPKDSNFA611GDLVRNLEGA621NQHVSKELLD631LAMQNAWFRK641SRFKGGKGKK
651-700651LNIGGGGLGY661RERPGLGSEN671SDRGNNNNVM681SNYEAYKPST691GAMGDRLTAM
701-750701KAAFQSQYKS711HFVAASLSNQ721KAGTSSAGAS731GWTSAGSLNS741VPTNSAQQGH
751-800751NSPDNPMTSS761TKNIPGFNNS771GNISSAPVTY781PSIGAQGVNN791TASGNNSREG
801-850801IGGGNGKRER811YTENRGGSRH821SHGDGGNRHG831DGGRHGDGYR841YPESGSRHTD
851-900851GHRHGETRHG861GSAGRHGESR871GANDGRNGES881RKEGFNRENK891MDPKVDSSRM
901-929901DKVDSKTDKT911PDGFAVPEPP921KRKKSRWDS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 281 | - | - | - |
Deep-Palm: 0.80
|
|
| 333 | - | - | - |
Deep-Palm: 0.82
|
|
| 339 | - | - | - |
Deep-Palm: 0.61
|
|
| 346 | - | - | - |
Deep-Palm: 0.66
|
|
| 382 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.95
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Testis
Specificity: 0.667
2/2 (100.0%)
1
NSC
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.