Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8BGA3 | Lrrtm2 | Leucine-rich repeat transmembrane neuronal protein … | Mus musculus (Mouse) | 515 aa |
Protein Details: Q8BGA3 (Lrrtm2)
Protein Information
| Accession | Q8BGA3 |
|---|---|
| Protein Names | Leucine-rich repeat transmembrane neuronal protein 2 |
| Gene Symbol | Lrrtm2 |
| Organism | Mus musculus (Mouse) |
| Length | 515 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31311849 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGLHFKWPLG11APMLAAIYAM21SVVLKMLPAL31GMACPPKCRC41EKLLFYCDSQ
51-10051GFHSVPNATD61KGSLGLSLRH71NHITALERDQ81FASFSQLTWL91HLDHNQISTV
101-150101KEDAFQGLYK111LKELILSSNK121IFYLPNTTFT131QLINLQNLDL141SFNQLSSLHP
151-200151ELFYGLRKLQ161TLHLRSNSLR171TIPVRLFWDC181RSLEFLDLST191NRLRSLARNG
201-250201FAGLIKLREL211HLEHNQLTKI221NFAHFLRLSS231LHTLFLQWNK241ISNLTCGMDW
251-300251TWSTLEKLDL261TGNEIKAIDL271TVFETMPNLK281ILLMDNNKLN291SLDSKILNSL
301-350301KSLTTVGLSG311NLWECSPRVC321ALASWLGSFQ331GRWEHSILCH341SPDHTQGEDI
351-400351LDAVHGFQLC361WNLSTTVTAM371ATTYRDPTTE381YTKISSSSYH391VGDKEIPTTA
401-450401GIAVTTEEHF411PEPDNAIFTQ421RVITGTMALL431FSFFFIIFIV441FISRKCCPPT
451-500451LRRIRQCSMI461QNHRQLRSQT471RLHMSNMSDQ481GPYNEYEPTH491EGPFIIINGY
501-515501GQCKCQQLPY511KECEV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 34 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.60
|
|
| 38 | - | - | - |
Deep-Palm: 0.33
|
|
| 40 | - | - | - |
Deep-Palm: 0.15
|
|
| 47 | - | - | - |
Deep-Palm: 0.09
|
|
| 180 | - | - | - |
Deep-Palm: 0.93
|
|
| 246 | - | - | - |
Deep-Palm: 0.12
|
|
| 315 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.88
|
| 320 | - |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.58
|
|
| 339 | - | - | - |
Deep-Palm: 0.45
|
|
| 360 | - | - | - |
Deep-Palm: 0.46
|
|
| 446 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.13
|
|
| 447 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.13
|
|
| 457 | - | - | - |
Deep-Palm: 0.53
|
|
| 503 | - | - | - |
Deep-Palm: 0.02
|
|
| 505 | - | - | - |
Deep-Palm: 0.01
|
|
| 513 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Brain
Specificity: 0.045
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
21
Brain tissue (Mass)
Specificity: 0.955
21/56 (37.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.