Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8BGC0 | Htatsf1 | 17S U2 SnRNP complex component … | Mus musculus (Mouse) | 757 aa |
Protein Details: Q8BGC0 (Htatsf1)
Protein Information
| Accession | Q8BGC0 |
|---|---|
| Protein Names | 17S U2 SnRNP complex component HTATSF1 (HIV Tat-specific factor 1 homolog) |
| Gene Symbol | Htatsf1 |
| Organism | Mus musculus (Mouse) |
| Length | 757 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 37925639 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSGNNLSGND11EFDEQLRMQE21LYGGDPKEGD31TQNEPSGEAH41SLGQPPDDTP
51-10051YEWDLDKKAW61FPKITEDFIA71TYQANYGFSS81DGASSSTANV91QDANTKAVEE
101-150101PPQKEVPETP111DSKRKGEKRK121AESGWFHVEE131DRNTNVYVSG141LPPDITVDEF
151-200151IQLMSKFGII161MRDPQTEEFK171VKLYKDDQGN181LKGDGLCCYL191KKESVELALK
201-250201LLDEDEIRGY211KLHVEVAKFQ221LKGEYDASKK231KKKCKDYKKK241LSLQQKQLDW
251-300251RPERRAGPNR261LRHERVVILK271NMFHPMDFED281DPLVLNEIRE291DLRVECSKFG
301-350301QIRKLLLFDR311HPDGVASVSF321REPEEADHCI331QTLDGRWFGG341RQITAQAWDG
351-400351TTDYQVEETS361REREERLRGW371EAFLNAPEAS381RGLRRMDSIA391GSERPGPSRM
401-450401RHFSEHPSMS411NMKAQEATTG421MAFEETIDEN431KFEKAEEGGE441SEGDASEKDA
451-500451KEGGSDGDHP461EREGGEGCSK471KENEEGCPER481ALEPEEGNPQ491TEAQENGPER
501-550501EARKKSKMDY511EKNGFSKESE521DNDLGKESEG531EDSLKKESED541DDSEEESEED
551-600551SSEKQSQDGS561DKEIEENGVK571KDVDQDVSDK581EFPEDVEKES591EENETDKSEF
601-650601DEGSERVLDE611EGSEREFEED621SDEKEEEGDD631DEEEVVYERV641FDDDSDDIEE
651-700651EEEADEKECE661DADDKEEDND671IDEKLFDDSD681EKEDEEDTDG691KKDDDASDKV
701-750701FEDNSNEKLF711DEEEGPNEKL721FDDSDERGTV731GNVKEDGSQS741TDSSFALSSS
751-757751DDDDDEV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 187 | - | - | - |
Deep-Palm: 0.96
|
|
| 188 | - | - | - |
Deep-Palm: 0.96
|
|
| 234 | - | - | - |
Deep-Palm: 0.92
|
|
| 296 | - | - | - |
Deep-Palm: 0.94
|
|
| 329 | - | - | - |
Deep-Palm: 0.76
|
|
| 468 | - | - | - |
Deep-Palm: 0.74
|
|
| 477 | - | - | - |
Deep-Palm: 0.76
|
|
| 659 | - | - | - |
Deep-Palm: 0.09
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Testis
Specificity: 0.667
2/2 (100.0%)
1
Liver
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.