Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8BGH2 | Samm50 | Sorting and assembly machinery component … | Mus musculus (Mouse) | 469 aa |
Protein Details: Q8BGH2 (Samm50)
Protein Information
| Accession | Q8BGH2 |
|---|---|
| Protein Names | Sorting and assembly machinery component 50 homolog |
| Gene Symbol | Samm50 |
| Organism | Mus musculus (Mouse) |
| Length | 469 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 31311849 34200797 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGTVHARSLE11PLPSSGTDFG21ALGEEAEFVE31VEPEAKQEIL41ENKDVVVQHV
51-10051HFDGLGRTKD61DIIICEIGEV71FKAKNLIEVM81RRSHEAREKL91LRLGIFRQVD
101-150101VLIDTCHGED111ALPNGLDVTF121EVTELRRLTG131SYNTMVGNNE141GSMVLGLKLP
151-200151NLLGRAEKVT161FQFSYGTKET171SYGLSFFKPQ181PGNFERNFSV191NLYKVTGQFP
201-250201WSSLRETDRG211VSAEYSFPLW221KTSHTVKWEG231VWRELGCLSR241TASFAVRKES
251-300251GHSLKSSLSH261AMVIDSRNSS271ILPRRGALFK281VNQELAGYTG291GDVSFIKEDF
301-350301ELQLNKPLAL311DSVFSTSLWG321GMLVPIGDKP331SSIADRFYLG341GPTSVRGFSM
351-400351HSIGPQSEGD361YLGGEAYWAG371GLHLYTPLPF381RPGQGGFGEL391FRTHFFLNAG
401-450401NLCNLNYGEG411PKAHIRKLAE421CIRWSYGAGV431VLRLGNIARL441ELNYCIPMGV
451-469451QGGDRICDGV461QFGAGIRFL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 65 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.90
Deep-Palm: 0.77
|
| 106 | - | - | - |
Deep-Palm: 0.93
|
|
| 237 | - |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.90
|
|
| 403 | - |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.88
|
|
| 421 | - | - | - |
Deep-Palm: 0.97
|
|
| 445 | SWISSPALM DBPTM CYSMODDB | Omp85 superfamily domain |
Liver
(28526873)
|
Liver
(34884899)
Brain
(35358180)
|
Deep-Palm: 0.94
|
| 457 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.07
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.455
5
Brain
Specificity: 0.143
5/5 (100.0%)
4
Liver
Specificity: 0.114
4/4 (100.0%)
2
Testis
Specificity: 0.057
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
24
Brain tissue (Mass)
Specificity: 0.686
24/56 (42.9%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.