Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8CHC4 | Synj1 | Synaptojanin-1 (EC 3.1.3.36) (Synaptic inositol … | Mus musculus (Mouse) | 1574 aa |
Protein Details: Q8CHC4 (Synj1)
Protein Information
| Accession | Q8CHC4 |
|---|---|
| Protein Names | Synaptojanin-1 (EC 3.1.3.36) (Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1) |
| Gene Symbol | Synj1 |
| Organism | Mus musculus (Mouse) |
| Length | 1574 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31311849 34200797 35358180 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAFSKGFRIY11HKLDPPPFSL21IVETRHKEEC31LMFESGAVAV41LSSAEKEAIK
51-10051GTYAKVLDAY61GLLGVLRLNL71GDTMLHYLVL81VTGCMSVGKI91QESEVFRVTS
101-150101TEFISLRVDA111SDEDRISEVR121KVLNSGNFYF131AWSASGVSLD141LSLNAHRSMQ
151-200151EHTTDNRFFW161NQSLHLHLKH171YGVNCDDWLL181RLMCGGVEIR191TIYAAHKQAK
201-250201ACLISRLSCE211RAGTRFNVRG221TNDDGHVANF231VETEQVIYLD241DCVSSFIQIR
251-300251GSVPLFWEQP261GLQVGSHRVR271MSRGFEANAP281AFDRHFRTLK291DLYGKQIVVN
301-350301LLGSKEGEHM311LSKAFQSHLK321ASEHASDIHM331VSFDYHQMVK341GGKAEKLHSI
351-400351LKPQVQKFLD361YGFFYFDGSE371VQRCQSGTVR381TNCLDCLDRT391NSVQAFLGLE
401-450401MLAKQLEALG411LAEKPQLVTR421FQEVFRSMWS431VNGDSISKIY441AGTGALEGKA
451-500451KLKDGARSVT461RTIQNNFFDS471SKQEAIDVLL481LGNTLNSDLA491DKARALLTTG
501-550501SLRVSEQTLQ511SASSKVLKNM521CENFYKYSKP531KKIRVCVGTW541NVNGGKQFRS
551-600551IAFKNQTLTD561WLLDAPKLAG571IQEFQDKRSK581PTDIFAIGFE591EMVELNAGNI
601-650601VNASTTNQKL611WAVELQKTIS621RDNKYVLLAS631EQLVGVCLFV641FIRPQHAPFI
651-700651RDVAVDTVKT661GMGGATGNKG671AVAIRMLFHT681TSLCFVCSHF691AAGQSQVKER
701-750701NEDFVEIARK711LSFPMGRMLF721SHDYVFWCGD731FNYRIDLPNE741EVKELIRQQN
751-800751WDSLIAGDQL761INQKNAGQIF771RGFLEGKVTF781APTYKYDLFS791EDYDTSEKCR
801-850801TPAWTDRVLW811RRRKWPFDRS821AEDLDLLNAS831FQDESKILYT841WTPGTLLHYG
851-900851RAELKTSDHR861PVVALIDIDI871FEVEAEERQK881IYKEVIAVQG891PPDGTVLVSI
901-950901KSSAQESTFF911DDALIDELLR921QFAHFGEVIL931IRFVEDKMWV941TFLEGSSALN
951-1000951ALSLNGKELL961NRTITITLKS971PDWIKHLEEE981MSLEKISVTL991PSSASSTLLG
1001-10501001EDAEVAADFD1011MEGDVDDYSA1021EVEELLPQHL1031QPSSSSGLGT1041SPSSSPRTSP
1051-11001051CQSPTVPEYS1061APSLPIRPSR1071APSRTPGPPS1081SQGSPVDTQP1091AAQKDSSQTL
1101-11501101EPKRPPPPRP1111VAPPARPAPP1121QRPPPPSGAR1131SPAPARKEFG1141GVGAPPSPGV
1151-12001151ARREIEAPKS1161PGTARKDNIG1171RNQPSPQAGL1181AGPGPAGYGA1191ARPTIPARAG
1201-12501201VISAPQSQAR1211VCAGRPTPDS1221QSKPSETLKG1231PAVLPEPLKP1241QAAFPQQPSL
1251-13001251PTPAQKLQDP1261LVPIAAPTMP1271PSGPQPNLET1281PPQPPPRSRS1291SQSLPSDSSP
1301-13501301QLQQEQPTGQ1311VKINGISGVK1321QEPTLKSDPF1331EDLSLSVLAV1341SKAQPSVQIS
1351-14001351PVLTPDPKML1361IQLPSASQSQ1371VNPLSSVSCM1381PTRPPGPEES1391KSQESMGSSA
1401-14501401NPFPSLPCRN1411PFTDRTAAPG1421NPFRVQSQES1431EATSWLSKEE1441PVPNSPFPPL
1451-15001451MPLSHDTSKA1461SSSLGGFEDN1471FDLQSQSTVK1481TSNPKGWVTF1491DEDDNFPTTG
1501-15501501KSKSVCPDLV1511GNAPASFDDD1521WSKGASVSFC1531VLPARRPPPP1541PPPVPLLPPG
1551-15741551TTSSAGPSTT1561LPSKAPSTLD1571FTER
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 30 | - | - | - |
Deep-Palm: 0.89
|
|
| 84 | - | - | - |
Deep-Palm: 0.89
|
|
| 175 | - | - | - |
Deep-Palm: 0.41
|
|
| 184 | - | - | - |
Deep-Palm: 0.36
|
|
| 202 | SacI homology domain |
Brain
(34200797)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.91
|
|
| 209 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.93
|
|
| 242 | - | - | - |
Deep-Palm: 0.43
|
|
| 374 | - | - | - |
Deep-Palm: 0.07
|
|
| 383 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.50
|
|
| 386 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.52
|
|
| 521 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.56
|
|
| 536 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.18
|
|
| 637 | - | - | - |
Deep-Palm: 0.91
|
|
| 684 | - | - | - |
Deep-Palm: 0.77
|
|
| 687 | - | - | - |
Deep-Palm: 0.70
|
|
| 728 | - | - | - |
Deep-Palm: 0.03
|
|
| 799 | - | - | - |
Deep-Palm: 0.36
|
|
| 1051 | SWISSPALM DBPTM CYSMODDB | - |
Brain
(31311849)
Forebrain
(28680068)
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.91
|
| 1212 | - |
Brain
(31311849)
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.87
|
|
| 1379 | - | - | - |
Deep-Palm: 0.74
|
|
| 1408 | - | - | - |
Deep-Palm: 0.68
|
|
| 1506 | - | - | - |
Deep-Palm: 0.69
|
|
| 1530 | - | - | - |
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Brain
Specificity: 0.161
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
26
Brain tissue (Mass)
Specificity: 0.839
26/56 (46.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.