Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8CIE6 | Copa | Coatomer subunit alpha (Alpha-coat protein) … | Mus musculus (Mouse) | 1224 aa |
Protein Details: Q8CIE6 (Copa)
Protein Information
| Accession | Q8CIE6 |
|---|---|
| Protein Names | Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP) [Cleaved into: Xenin (Xenopsin-related peptide); Proxenin] |
| Gene Symbol | Copa |
| Organism | Mus musculus (Mouse) |
| Length | 1224 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29217618 29733200 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLTKFETKSA11RVKGLSFHPK21RPWILTSLHN31GVIQLWDYRM41CTLIDKFDEH
51-10051DGPVRGIDFH61KQQPLFVSGG71DDYKIKVWNY81KLRRCLFTLL91GHLDYIRTTF
101-150101FHHEYPWILS111ASDDQTIRVW121NWQSRTCVCV131LTGHNHYVMC141AQFHPSEDLV
151-200151VSASLDQTVR161VWDISGLRKK171NLSPGAVESD181VRGITGVDLF191GTTDAVVKHV
201-250201LEGHDRGVNW211AAFHPTMPLI221VSGADDRQVK231IWRMNESKAW241EVDTCRGHYN
251-300251NVSCAVFHPR261QELILSNSED271KSIRVWDMSK281RTGVQTFRRD291HDRFWVLAAH
301-350301PNLNLFAAGH311DGGMIVFKLE321RERPAYAVHG331NMLHYVKDRF341LRQLDFNSSK
351-400351DVAVMQLRSG361SKFPVFNMSY371NPAENAVLLC381TRASNLENST391YDLYTIPKDA
401-450401DSQNPDAPEG411KRSSGLTAVW421VARNRFAVLD431RMHSLLIKNL441KNEITKKIQV
451-500451PNCDEIFYAG461TGNLLLRDAD471SITLFDVQQK481RTLASVKISK491VKYVIWSADM
501-550501SHVALLAKHA511IVICNRKLDA521LCNIHENIRV531KSGAWDESGV541FIYTTSNHIK
551-600551YAVTTGDHGI561IRTLDLPIYV571TRVKGNNVYC581LDRECRPRVL591TIDPTEFKFK
601-650601LALINRKYDE611VLHMVRNAKL621VGQSIIAYLQ631KKGYPEVALH641FVKDEKTRFS
651-700651LALECGNIEI661ALEAAKALDD671KNCWEKLGEV681ALLQGNHQIV691EMCYQRTKNF
701-750701DKLSFLYLIT711GNLEKLRKMM721KIAEIRKDMS731GHYQNALYLG741DVSERVRILK
751-800751NCGQKSLAYL761SAATHGLDEE771AESLKETFDP781EKETIPDIDP791NAKLLQPPAP
801-850801IMPLDTNWPL811LTVSKGFFEG821SIASKGKGGA831LAADIDIDTV841GTEGWGEDAE
851-900851LQLDEDGFVE861APEGLGEDVL871GKGQEEGGGW881DVEEDLELPP891ELDVPSGVSG
901-950901SAEDGFFVPP911TKGTSPTQIW921CNNSQLPVDH931ILAGSFETAM941RLLHDQVGVI
951-1000951QFGPYKQLFL961QTYARGRTTY971QALPCLPSMY981SYPNRNWKDA991GLKNGVPAVG
1001-10501001LKLNDLIQRL1011QLCYQLTTVG1021KFEEAVEKFR1031SILLSVPLLV1041VDNKQEIAEA
1051-11001051QQLITICREY1061IVGLCMEIER1071KKLPKETLDQ1081QKRICEMAAY1091FTHSNLQPVH
1101-11501101MILVLRTALN1111LFFKLKNFKT1121AATFARRLLE1131LGPKPEVAQQ1141TRKILSACEK
1151-12001151NPTDACQLNY1161DMHNPFDICA1171ASYRPIYRGK1181PVEKCPLSGA1191CYSPEFKGQI
1201-12241201CRVTTVTEIG1211KDVIGLRISP1221LQFR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 41 | SWISSPALM DBPTM CYSMODDB | WD40-repeat-containing domain superfamily WD40/YVTN repeat-like-containing domain superfamily Coatomer complex subunit |
Liver
(28526873)
| - |
GPS-Palm: 0.90
Deep-Palm: 0.48
|
| 85 | - | - | - |
Deep-Palm: 0.50
|
|
| 127 | - | - | - |
Deep-Palm: 0.02
|
|
| 129 | - | - | - |
Deep-Palm: 0.02
|
|
| 140 | - | - | - |
Deep-Palm: 0.12
|
|
| 245 | SWISSPALM DBPTM CYSMODDB | WDR5 beta-propeller domain |
Liver
(28526873)
| - |
Deep-Palm: 0.03
|
| 254 | SWISSPALM DBPTM CYSMODDB | WDR5 beta-propeller domain |
Liver
(28526873)
| - |
Deep-Palm: 0.26
|
| 380 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
Deep-Palm: 0.75
|
| 453 | SWISSPALM DBPTM CYSMODDB | COPA/B second beta-propeller |
Liver
(28526873)
| - |
Deep-Palm: 0.85
|
| 514 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.48
|
|
| 522 | - | - | - |
Deep-Palm: 0.55
|
|
| 580 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.90
Deep-Palm: 0.77
|
| 585 | - | - | - |
Deep-Palm: 0.72
|
|
| 655 | - | - | - |
Deep-Palm: 0.97
|
|
| 673 | - | - | - |
Deep-Palm: 0.97
|
|
| 693 | - | - | - |
Deep-Palm: 0.88
|
|
| 752 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 921 | - | - | - |
Deep-Palm: 0.24
|
|
| 975 | - | - | - |
Deep-Palm: 0.64
|
|
| 1013 | SWISSPALM DBPTM CYSMODDB | Coatomer (COPI) alpha subunit C-terminus |
Liver
(28526873)
| - |
Deep-Palm: 0.96
|
| 1057 | SWISSPALM DBPTM CYSMODDB | Coatomer (COPI) alpha subunit C-terminus |
Liver
(28526873)
| - |
Deep-Palm: 0.75
|
| 1065 | - | - | - |
Deep-Palm: 0.96
|
|
| 1085 | - | - | - |
Deep-Palm: 0.60
|
|
| 1148 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.45
|
|
| 1156 | - | - | - |
Deep-Palm: 0.10
|
|
| 1169 | - | - | - |
Deep-Palm: 0.15
|
|
| 1185 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.73
|
|
| 1191 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.80
|
|
| 1201 | - | - | - |
Deep-Palm: 0.80
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
6
Liver
Specificity: 0.750
6/6 (100.0%)
1
Raw 264.7
Specificity: 0.125
1/1 (100.0%)
1
Brain
Specificity: 0.125
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.