Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8IXJ3 | SNRP116 | 116 kDa U5 small nuclear … | Homo sapiens (Human) | 850 aa |
Protein Details: Q8IXJ3 (SNRP116)
Protein Information
| Accession | Q8IXJ3 |
|---|---|
| Protein Names | 116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP-specific protein, 116 kDa) |
| Gene Symbol | SNRP116 |
| Organism | Homo sapiens (Human) |
| Length | 850 aa |
| Isoforms | No isoforms |
| Related PMIDs | 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDNSELIRNV11TLCGHLHHGK21TCFVDCLIEQ31THPEIRKRYD41QDLCYTDILF
51-10051TEQERGVGIK61STPVTVVLPD71TKGKSYLFNI81MDTPGHVNFS91DEVTAGLRIS
101-150101DGVVLFIDAA111EGVMLNTERL121IKHAVQERLA131VTVCINKIDR141LILELKLPPT
151-200151DAYYKLRHIV161DEVNGLISMY171STDENLILSP181LLGNVCFSSS191QYSICFTLGS
201-250201FAKIYADTFG211DINYQEFAKR221LWGDIYFNPK231TRKFTKKAPT241SSSQRSFVEF
251-300251ILEPLYKILA261QVVGDVDTSL271PRTLDELGIH281LTKEELKLNI291RPLLRLVCKK
301-350301FFGEFTGFVD311MCVQHIPSPK321VGAKPKIEHT331YTGGVDSDLG341EAMSDCDPDG
351-400351PLMCHTTKMY361STDDGVQFHA371FGRVLSGTIH381AGQPVKVLGE391NYTLEDEEDS
401-450401QICTVGRLWI411SVARYHIEVN421RVPAGNWVLI431EGVDQPIVKT441ATITEPRGNE
451-500451EAQIFRPLKF461NTTSVIKIAV471EPVNPSELPK481MLDGLRKVNK491SYPSLTTKVE
501-550501ESGEHVILGT511GELYLDCVMH521DLRKMYSEID531IKVADPVVTF541CETVVETSSL
551-600551KCFAETPNKK561NKITMIAEPL571EKGLAEDIEN581EVVQITWNRK591KLGEFFQTKY
601-650601DWDLLAARSI611WAFGPDATGP621NILVDDTLPS631EVDKALLGSV641KDSIVQGFQW
651-700651GTREGPLCDE661LIRNVKFKIL671DAVVAQKPLH681RGGGQIIPTA691RRVVYSAFLM
701-750701ATPRLMEPYY711FVEVQAPADC721VSAVYTVLAR731RRGHVTQDAP741IPGSPLYTIK
751-800751AFIPAIDSFG761FETDLRTHTQ771GQAFSLSVFH781HWQIVPGDPL791DKSIVIRPLE
801-850801PQPAPHLARE811FMIKTRRRKG821LSEDVSISKF831FDDPMLLELA841KQDVVLNYPM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 13 | Translational (tr)-type GTP-binding domain P-loop containing nucleoside triphosphate hydrolase | - | - |
Deep-Palm: 0.21
|
|
| 22 | Translational (tr)-type GTP-binding domain P-loop containing nucleoside triphosphate hydrolase | - | - |
Deep-Palm: 0.47
|
|
| 26 | P-loop containing nucleoside triphosphate hydrolase Translational (tr)-type GTP-binding domain | - | - |
Deep-Palm: 0.35
|
|
| 44 | P-loop containing nucleoside triphosphate hydrolase | - |
Unknown
(32651440)
|
Deep-Palm: 0.54
|
|
| 134 | - | - | - |
Deep-Palm: 0.97
|
|
| 186 | - | - | - |
Deep-Palm: 0.92
|
|
| 195 | - | - | - |
Deep-Palm: 0.55
|
|
| 298 | - | - | - |
Deep-Palm: 0.97
|
|
| 312 | - | - | - |
Deep-Palm: 0.56
|
|
| 346 | - | - | - |
Deep-Palm: 0.12
|
|
| 354 | - | - | - |
Deep-Palm: 0.04
|
|
| 403 | - | - | - |
Deep-Palm: 0.89
|
|
| 517 | - | - | - |
Deep-Palm: 0.93
|
|
| 541 | - | - |
LNCaP
(31251020)
|
Deep-Palm: 0.76
|
|
| 552 | - | - | - |
Deep-Palm: 0.71
|
|
| 658 | - | - | - |
Deep-Palm: 0.91
|
|
| 720 | - | - | - |
Deep-Palm: 0.84
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
cerebral cortex
Specificity: 1.000
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.