Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8K377 | Lrrtm1 | Leucine-rich repeat transmembrane neuronal protein … | Mus musculus (Mouse) | 522 aa |
Protein Details: Q8K377 (Lrrtm1)
Protein Information
| Accession | Q8K377 |
|---|---|
| Protein Names | Leucine-rich repeat transmembrane neuronal protein 1 |
| Gene Symbol | Lrrtm1 |
| Organism | Mus musculus (Mouse) |
| Length | 522 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31311849 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDFLLLGLCL11HWLLRRPSGV21VLCLLGACFQ31MLPAAPSGCP41GQCRCEGRLL
51-10051YCEALNLTEA61PHNLSGLLGL71SLRYNSLSEL81RAGQFTGLMQ91LTWLYLDHNH
101-150101ICSVQGDAFQ111KLRRVKELTL121SSNQITELAN131TTFRPMPNLR141SVDLSYNKLQ
151-200151ALAPDLFHGL161RKLTTLHMRA171NAIQFVPVRI181FQDCRSLKFL191DIGYNQLKSL
201-250201ARNSFAGLFK211LTELHLEHND221LIKVNFAHFP231RLISLHSLCL241RRNKVAIVVS
251-300251SLDWVWNLEK261MDLSGNEIEY271MEPHVFETVP281YLQTLQLDSN291RLTYIEPRIL
301-350301NSWKSLTSIT311LAGNLWDCGR321NVCALASWLS331NFQGRYDANL341QCASPEYAQG
351-400351EDVLDAVYAF361HLCEDGAEPT371SGHLLSVAVT381NRSDLTPPES391SATTLVDGGE
401-450401GHDGTFEPIT411VALPGGEHAE421NAVQIHKVVT431GTMALIFSFL441IVVLVLYVSW
451-500451KCFPASLRQL461RQCFVTQRRK471QKQKQTMHQM481AAMSAQEYYV491DYKPNHIEGA
501-522501LVIINEYGSC511TCHQQPAREC521EV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 9 | - | - | - |
Deep-Palm: 0.15
|
|
| 23 | - | - | - |
Deep-Palm: 0.97
|
|
| 28 | - | - | - |
Deep-Palm: 0.96
|
|
| 39 | - | - | - |
Deep-Palm: 0.79
|
|
| 43 | - | - | - |
Deep-Palm: 0.38
|
|
| 45 | - | - | - |
Deep-Palm: 0.70
|
|
| 52 | - | - | - |
Deep-Palm: 0.75
|
|
| 102 | - | - | - |
Deep-Palm: 0.92
|
|
| 184 | - | - | - |
Deep-Palm: 0.79
|
|
| 239 | - |
Brain
(31311849)
|
Brain
(31311849)
|
GPS-Palm: 0.96
Deep-Palm: 0.93
|
|
| 318 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.64
|
|
| 323 | - | - | - |
Deep-Palm: 0.42
|
|
| 342 | - | - | - |
Deep-Palm: 0.73
|
|
| 363 | - | - | - |
Deep-Palm: 0.94
|
|
| 452 | - | - | - |
Deep-Palm: 0.94
|
|
| 463 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.97
Deep-Palm: 0.81
|
| 510 | - | - | - |
Deep-Palm: 0.02
|
|
| 512 | - | - | - |
Deep-Palm: 0.02
|
|
| 520 | - | - | - |
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Brain
Specificity: 0.200
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
Brain tissue (Mass)
Specificity: 0.800
4/56 (7.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.