Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8K441 | Abca6 | ATP-binding cassette sub-family A member … | Mus musculus (Mouse) | 1624 aa |
Protein Details: Q8K441 (Abca6)
Protein Information
| Accession | Q8K441 |
|---|---|
| Protein Names | ATP-binding cassette sub-family A member 6 (EC 7.6.2.-) |
| Gene Symbol | Abca6 |
| Organism | Mus musculus (Mouse) |
| Length | 1624 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MKELSVHVRQ11QTRALLHKIL21LKKWRRKRES31LLEWSIPIII41GLHMGLFSYL
51-10051ARNIQVLEVP61PQDLGSLNEF71NGSSLVVVYT81PISNITQQIM91NKTTFAPTMK
101-150101GTRIIGVPSI111EDLDEVLLHN121IPDALGVIFN131DSFSYQLKVL141RMYGNPFLKE
151-200151DLLAHCWDTH161SQAFCSLSKY171WERGFVALQT181AINAGIIEVT191TNHSVMEELM
201-250201SIDGINMKTL211PFIPRDLSDY221EIFILFCLLY231FSSFIYFASS241NVTKERKQCK
251-300251EVMKVMGLQD261SAFWLSWGLI271YVGFIFIISI281FIAIIITSTQ291IIMMTGFLVI
301-350301FTLFFLYGLS311LIAVTFLMAV321LLQKAVLTNL331IVLFFTLFWG341CVGFTVLHKE
351-400351LPPSLEWVLS361IFSPFAFTSG371MAKVIFQDYN381LNGVVFPDPS391GESYVMIAVF
401-450401FILAFDSLLY411LVLALYFDKI421LLYGAEHRSA431PLFFLNPTSC441FRKTANRNKV
451-500451IERDLDPELP461SDEYFEPVDP471EYQGKEAIRI481RNIKKEYKGK491SGKVKALKGL
501-550501FLDIYESQIT511AILGHSGAGK521SSLLNILSGL531YVPTAGSVTV541YNKNLSDMQD
551-600551LKEIRKAIGV561CPQHNVQFDA571LTVKENLTLF581AKIKGILPQD591VEQEVQQILS
601-650601ELDMQNIRDD611LAEHLSEGQK621RKLTFGIATV631GDPQILLLDE641PTVGLDPFSR
651-700651QRIWGFLKER661RADHVILFST671QFMDEADILA681DRKVLIANGA691LKCTGSSVFL
701-750701KRKWGLGYHL711SLFMDETCDS721ERLTSFINHH731IPYAKLKAKT741KEKLVYILPL
751-800751ERTSEFPEFF761SDLDKYSGQG771LMSYEVSMST781LNDVFLNLEG791EPSTKQDFEK
801-850801RETATDSESL811NDMEVAYPSL821SQVQETVSTM831SLWRMQVCAI841ARLRILKLKR
851-900851ERKAFLIILL861LLGIALLPLV871IEYVANALLE881VKNNWEFKTD891LYFLSPGQLP
901-950901QGLRTSLLVI911NNTESNIEDF921LQSLKHQNIV931LEVDDFENRN941ATNSLSYNGA
951-1000951IIVSGRQKDY961RFSAVCNTKR971LHCFPILMNV981ISNGILHMLN991HTQYIRIKED
1001-10501001IFSPFIVLVW1011TGIQETCLFI1021LCVICSLSPH1031IAMSSVSDYK1041KKADSQLWIS
1051-11001051GLYPSAYWCG1061QAVVDISLFS1071GMLLTSYFTS1081YTSKLLNIDM1091TSEIVFSVIV
1101-11501101LALGCAASLV1111FLTYVISFVF1121GKRKKNSTLW1131SICFLLVIAI1141TFEKVANGPF
1151-12001151NEALVISATM1161LVPSFALNGL1171LVVLEMRAYQ1181YYIEFEEIKH1191GLSAVDLLLC
1201-12501201LIPYIHTLLF1211IFVLRCLELK1221YGKNVVRRDP1231IFRIAPQSLK1241AQPNPEEPID
1251-13001251EDENVQAERL1261RTSDALSTPN1271LDEKPVIIAS1281CLHKEYAGQK1291KHCCSRRTRN
1301-13501301MAVRNVSFCV1311NKGEILGLLG1321PDGAGKSSSI1331RMIAGITKPT1341AGQVELKRLS
1351-14001351SAVGHQGDSR1361AEFGYCPQEN1371GLWPNLTVKE1381HLELYAAVKG1391LRKEDAVVAI
1401-14501401SRLVNALKLH1411DQLNVQVQNL1421VAGATRKLCF1431VLSILGNSPV1441LILDEPSTGL
1451-15001451DVSGKHQVWQ1461AIQAVVKDNE1471KGVLLSTHDL1481AEAEALCDRA1491AIMVSGRLRC
1501-15501501IGPIQHLKRK1511FGQDYVLELR1521VKDVSQEPLV1531HREILKLFPQ1541AARQDRCFSL
1551-16001551LTYKLPVTDV1561HPLSQAFHKL1571EAVKHGFDLE1581DYSLSQCTLD1591RVILELSKEQ
1601-16241601ELGTVYEEAD1611MTLGRKLLPP1621SDEL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 156 | - | - | - |
Deep-Palm: 0.20
|
|
| 165 | - | - | - |
Deep-Palm: 0.52
|
|
| 227 | - | - | - |
Deep-Palm: 0.16
|
|
| 249 | - | - | - |
Deep-Palm: 0.38
|
|
| 341 | - | - | - |
Deep-Palm: 0.62
|
|
| 440 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
liver
(26165157)
Forebrain
(28680068)
| - |
Deep-Palm: 0.88
|
| 561 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
Deep-Palm: 0.77
|
| 693 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.98
|
|
| 718 | - | - | - |
Deep-Palm: 0.09
|
|
| 838 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.97
|
| 966 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
liver
(26165157)
| - |
Deep-Palm: 0.65
|
| 973 | - | - | - |
Deep-Palm: 0.20
|
|
| 1017 | - | - | - |
Deep-Palm: 0.28
|
|
| 1022 | - | - | - |
Deep-Palm: 0.46
|
|
| 1025 | - | - | - |
Deep-Palm: 0.12
|
|
| 1059 | - | - | - |
Deep-Palm: 0.45
|
|
| 1105 | - | - | - |
Deep-Palm: 0.64
|
|
| 1133 | - | - | - |
Deep-Palm: 0.85
|
|
| 1200 | - | - | - |
Deep-Palm: 0.92
|
|
| 1216 | - | - | - |
Deep-Palm: 0.93
|
|
| 1281 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
Deep-Palm: 0.86
|
| 1293 | - | - | - |
Deep-Palm: 0.28
|
|
| 1294 | - | - | - |
Deep-Palm: 0.21
|
|
| 1309 | - | - | - |
Deep-Palm: 0.97
|
|
| 1366 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
Deep-Palm: 0.67
|
| 1429 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 1487 | - | - | - |
Deep-Palm: 0.98
|
|
| 1500 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.97
|
|
| 1547 | - | - | - |
Deep-Palm: 0.96
|
|
| 1587 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Liver
(34884899)
|
Deep-Palm: 0.94
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Liver
Specificity: 1.000
6/6 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.