Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8N139 | ABCA6 | ATP-binding cassette sub-family A member … | Homo sapiens (Human) | 1617 aa |
Protein Details: Q8N139 (ABCA6)
Protein Information
| Accession | Q8N139 |
|---|---|
| Protein Names | ATP-binding cassette sub-family A member 6 (EC 7.6.2.-) |
| Gene Symbol | ABCA6 |
| Organism | Homo sapiens (Human) |
| Length | 1617 aa |
| Isoforms | No isoforms |
| Related PMIDs | 33636221 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MNMKQKSVYQ11QTKALLCKNF21LKKWRMKRES31LLEWGLSILL41GLCIALFSSS
51-10051MRNVQFPGMA61PQNLGRVDKF71NSSSLMVVYT81PISNLTQQIM91NKTALAPLLK
101-150101GTSVIGAPNK111THMDEILLEN121LPYAMGIIFN131ETFSYKLIFF141QGYNSPLWKE
151-200151DFSAHCWDGY161GEFSCTLTKY171WNRGFVALQT181AINTAIIEIT191TNHPVMEELM
201-250201SVTAITMKTL211PFITKNLLHN221EMFILFFLLH231FSPLVYFISL241NVTKERKKSK
251-300251NLMKMMGLQD261SAFWLSWGLI271YAGFIFIISI281FVTIIITFTQ291IIVMTGFMVI
301-350301FILFFLYGLS311LVALVFLMSV321LLKKAVLTNL331VVFLLTLFWG341CLGFTVFYEQ
351-400351LPSSLEWILN361ICSPFAFTTG371MIQIIKLDYN381LNGVIFPDPS391GDSYTMIATF
401-450401SMLLLDGLIY411LLLALYFDKI421LPYGDERHYS431PLFFLNSSSC441FQHQRTNAKV
451-500451IEKEIDAEHP461SDDYFEPVAP471EFQGKEAIRI481RNVKKEYKGK491SGKVEALKGL
501-550501LFDIYEGQIT511AILGHSGAGK521SSLLNILNGL531SVPTEGSVTI541YNKNLSEMQD
551-600551LEEIRKITGV561CPQFNVQFDI571LTVKENLSLF581AKIKGIHLKE591VEQEVQRILL
601-650601ELDMQNIQDN611LAKHLSEGQK621RKLTFGITIL631GDPQILLLDE641PTTGLDPFSR
651-700651DQVWSLLRER661RADHVILFST671QSMDEADILA681DRKVIMSNGR691LKCAGSSMFL
701-750701KRRWGLGYHL711SLHRNEICNP721EQITSFITHH731IPDAKLKTEN741KEKLVYTLPL
751-800751ERTNTFPDLF761SDLDKCSDQG771VTGYDISMST781LNEVFMKLEG791QSTIEQDFEQ
801-850801VEMIRDSESL811NEMELAHSSF821SEMQTAVSDM831GLWRMQVFAM841ARLRFLKLKR
851-900851QTKVLLTLLL861VFGIAIFPLI871VENIMYAMLN881EKIDWEFKNE891LYFLSPGQLP
901-950901QEPRTSLLII911NNTESNIEDF921IKSLKHQNIL931LEVDDFENRN941GTDGLSYNGA
951-1000951IIVSGKQKDY961RFSVVCNTKR971LHCFPILMNI981ISNGLLQMFN991HTQHIRIESS
1001-10501001PFPLSHIGLW1011TGLPDGSFFL1021FLVLCSISPY1031ITMGSISDYK1041KNAKSQLWIS
1051-11001051GLYTSAYWCG1061QALVDVSFFI1071LILLLMYLIF1081YIENMQYLLI1091TSQIVFALVI
1101-11501101VTPGYAASLV1111FFIYMISFIF1121RKRRKNSGLW1131SFYFFFASTI1141MFSITLINHF
1151-12001151DLSILITTMV1161LVPSYTLLGF1171KTFLEVRDQE1181HYREFPEANF1191ELSATDFLVC
1201-12501201FIPYFQTLLF1211VFVLRCMELK1221CGKKRMRKDP1231VFRISPQSRD1241AKPNPEEPID
1251-13001251EDEDIQTERI1261RTATALTTSI1271LDEKPVIIAS1281CLHKEYAGQK1291KSCFSKRKKK
1301-13501301IAARNISFCV1311QEGEILGLLG1321PNGAGKSSSI1331RMISGITKPT1341AGEVELKGCS
1351-14001351SVLGHLGYCP1361QENVLWPMLT1371LREHLEVYAA1381VKGLRKADAR1391LAIARLVSAF
1401-14501401KLHEQLNVPV1411QKLTAGITRK1421LCFVLSLLGN1431SPVLLLDEPS1441TGIDPTGQQQ
1451-15001451MWQAIQAVVK1461NTERGVLLTT1471HNLAEAEALC1481DRVAIMVSGR1491LRCIGSIQHL
1501-15501501KNKLGKDYIL1511ELKVKETSQV1521TLVHTEILKL1531FPQAAGQERY1541SSLLTYKLPV
1551-16001551ADVYPLSQTF1561HKLEAVKHNF1571NLEEYSLSQC1581TLEKVFLELS1591KEQEVGNFDE
1601-16171601EIDTTMRWKL1611LPHSDEP
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 17 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.96
|
|
| 43 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.97
|
|
| 156 | - | - | - |
Deep-Palm: 0.04
|
|
| 165 | - | - | - |
Deep-Palm: 0.08
|
|
| 341 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.83
|
|
| 362 | - | - | - |
Deep-Palm: 0.58
|
|
| 440 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.50
|
|
| 561 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.76
|
|
| 693 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.97
|
|
| 718 | - | - | - |
Deep-Palm: 0.08
|
|
| 766 | - | - | - |
Deep-Palm: 0.39
|
|
| 966 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.56
|
|
| 973 | - | - | - |
Deep-Palm: 0.32
|
|
| 1025 | - | - | - |
Deep-Palm: 0.68
|
|
| 1059 | - | - | - |
Deep-Palm: 0.69
|
|
| 1200 | - | - | - |
Deep-Palm: 0.61
|
|
| 1216 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.76
|
|
| 1221 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.89
|
|
| 1281 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.93
|
|
| 1293 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.84
|
|
| 1309 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.98
|
|
| 1349 | - | - | - |
Deep-Palm: 0.98
|
|
| 1359 | - | - | - |
Deep-Palm: 0.90
|
|
| 1422 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.98
|
|
| 1480 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.98
|
|
| 1493 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.98
|
|
| 1580 | - | - | - |
Deep-Palm: 0.91
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
heart
Specificity: 0.500
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Jurkat T cells (Mass)
Specificity: 0.500
1/10 (10.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 143 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 296 | G → C | 0.002033 | SNP | Missense Mutation | LUSC |
| 362 | C → F | 0.002033 | SNP | Missense Mutation | LUSC |
| 499 | G → C | 0.002506 | SNP | Missense Mutation | COAD |
| 561 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |
| 572 | T → _V573insFCWNRQSIKNI*Q*RFDILT | 0.001887 | INS | Nonsense Mutation | UCEC |
| 1121 | R → C | 0.007299 | SNP | Missense Mutation | READ |
| 1137 | A → Cfs*15 | 0.002141 | INS | Frame Shift Ins | SKCM |
| 1422 | C → Y | 0.002506 | SNP | Missense Mutation | COAD |
| 1508 | Y → C | 0.005435 | SNP | Missense Mutation | ESCA |
| 1575 | Y → C | 0.002506 | SNP | Missense Mutation | COAD |