Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8R480 | Nup85 | Nuclear pore complex protein Nup85 … | Mus musculus (Mouse) | 656 aa |
Protein Details: Q8R480 (Nup85)
Protein Information
| Accession | Q8R480 |
|---|---|
| Protein Names | Nuclear pore complex protein Nup85 (85 kDa nucleoporin) (FROUNT) (Nucleoporin Nup85) (Pericentrin-1) |
| Gene Symbol | Nup85 |
| Organism | Mus musculus (Mouse) |
| Length | 656 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 35477839 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MEELDCEPAV11TWIPGVNSKK21KQMCFDWGPG31EMLLCETSFN41QTGKSEKVPS
51-10051CPFIYIIRKD61VDVYSQILRK71LFNESHGIFV81GLQKIEEELS91GKSRKAQLVR
101-150101VSKNYRSVIR111ACMEEMHQVA121IAAKDPASGR131QFSSQVSILS141AMELIWNLCE
151-200151ILFIEVAPAG161PLLLHLLDWV171RLHVCEVDSL181SADVLGGDNP191SKHENFWDLV
201-250201TVLVLQGRLD211EARQMLAKEA221DANPSCAGMC231RVLGDLMRTM241PILSPGNTQT
251-300251LTELELKWQH261WREECERHLQ271DNTFAANPRL281ESLCKIMLGD291EAALLEQKEL
301-350301LSNWYHFLVT311RLLYSNPTVK321PIDLHFYAQS331SLDMFLGGES341SPEPLDNILM
351-400351AAFEFDIHQV361IKECSIALSN371WWFVAHLTDL381LDHCRLLQSH391NLYFGSNMRE
401-450401FLLLEYASGL411FAHHSLWQLG421VDYFDYCPEL431GRVSLELHIE441RIPLNTEQKA
451-500451LKVLRICEQR461QMTEQVKSIC471KILAMKAVRN481NRLGSALSWS491IRAKDAAFAT
501-550501LVSDRFLRDY511CERGCFSDLD521LIDNLGSAMM531LSDRLTFLGK541YREFHRLYGE
551-600551KRFGDAASLL561LSLMTSQIAP571RSFWMTLLTD581ALPLLEQKQV591IFSAEQTYEL
601-650601MRCLEDLASG611RPECGEPDAQ621RLQDDDIETT631KVEMLRLALA641RNLARAIIRE
651-656651GSLEGS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 6 | - | - | - |
Deep-Palm: 0.03
|
|
| 24 | - | - | - |
Deep-Palm: 0.29
|
|
| 35 | - | - | - |
Deep-Palm: 0.42
|
|
| 51 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.64
|
| 112 | - | - | - |
Deep-Palm: 0.75
|
|
| 149 | - | - | - |
Deep-Palm: 0.92
|
|
| 175 | - | - | - |
Deep-Palm: 0.92
|
|
| 226 | - | - | - |
Deep-Palm: 0.88
|
|
| 230 | - | - | - |
Deep-Palm: 0.86
|
|
| 265 | - | - | - |
Deep-Palm: 0.60
|
|
| 284 | - | - | - |
Deep-Palm: 0.98
|
|
| 364 | - | - | - |
Deep-Palm: 0.15
|
|
| 384 | - | - | - |
Deep-Palm: 0.15
|
|
| 427 | - | - | - |
Deep-Palm: 0.62
|
|
| 457 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.88
|
|
| 470 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.58
|
|
| 511 | - | - | - |
Deep-Palm: 0.93
|
|
| 515 | - | - | - |
Deep-Palm: 0.81
|
|
| 603 | - | - | - |
Deep-Palm: 0.82
|
|
| 614 | - | - | - |
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Testis
Specificity: 0.667
2/2 (100.0%)
1
Liver
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.