Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8TEQ6 | GEMIN5 | Gem-associated protein 5 (Gemin5) | Homo sapiens (Human) | 1508 aa |
Protein Details: Q8TEQ6 (GEMIN5)
Protein Information
| Accession | Q8TEQ6 |
|---|---|
| Protein Names | Gem-associated protein 5 (Gemin5) |
| Gene Symbol | GEMIN5 |
| Organism | Homo sapiens (Human) |
| Length | 1508 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31382980 32944167 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGQEPRTLPP11SPNWYCARCS21DAVPGGLFGF31AARTSVFLVR41VGPGAGESPG
51-10051TPPFRVIGEL61VGHTERVSGF71TFSHHPGQYN81LCATSSDDGT91VKIWDVETKT
101-150101VVTEHALHQH111TISTLHWSPR121VKDLIVSGDE131KGVVFCYWFN141RNDSQHLFIE
151-200151PRTIFCLTCS161PHHEDLVAIG171YKDGIVVIID181ISKKGEVIHR191LRGHDDEIHS
201-250201IAWCPLPGED211CLSINQEETS221EEAEITNGNA231VAQAPVTKGC241YLATGSKDQT
251-300251IRIWSCSRGR261GVMILKLPFL271KRRGGGIDPT281VKERLWLTLH291WPSNQPTQLV
301-350301SSCFGGELLQ311WDLTQSWRRK321YTLFSASSEG331QNHSRIVFNL341CPLQTEDDKQ
351-400351LLLSTSMDRD361VKCWDIATLE371CSWTLPSLGG381FAYSLAFSSV391DIGSLAIGVG
401-450401DGMIRVWNTL411SIKNNYDVKN421FWQGVKSKVT431ALCWHPTKEG441CLAFGTDDGK
451-500451VGLYDTYSNK461PPQISSTYHK471KTVYTLAWGP481PVPPMSLGGE491GDRPSLALYS
501-550501CGGEGIVLQH511NPWKLSGEAF521DINKLIRDTN531SIKYKLPVHT541EISWKADGKI
551-600551MALGNEDGSI561EIFQIPNLKL571ICTIQQHHKL581VNTISWHHEH591GSQPELSYLM
601-650601ASGSNNAVIY611VHNLKTVIES621SPESPVTITE631PYRTLSGHTA641KITSVAWSPH
651-700651HDGRLVSASY661DGTAQVWDAL671REEPLCNFRG681HRGRLLCVAW691SPLDPDCIYS
701-750701GADDFCVHKW711LTSMQDHSRP721PQGKKSIELE731KKRLSQPKAK741PKKKKKPTLR
751-800751TPVKLESIDG761NEEESMKENS771GPVENGVSDQ781EGEEQAREPE791LPCGLAPAVS
801-850801REPVICTPVS811SGFEKSKVTI821NNKVILLKKE831PPKEKPETLI841KKRKARSLLP
851-900851LSTSLDHRSK861EELHQDCLVL871ATAKHSRELN881EDVSADVEER891FHLGLFTDRA
901-950901TLYRMIDIEG911KGHLENGHPE921LFHQLMLWKG931DLKGVLQTAA941ERGELTDNLV
951-1000951AMAPAAGYHV961WLWAVEAFAK971QLCFQDQYVK981AASHLLSIHK991VYEAVELLKS
1001-10501001NHFYREAIAI1011AKARLRPEDP1021VLKDLYLSWG1031TVLERDGHYA1041VAAKCYLGAT
1051-11001051CAYDAAKVLA1061KKGDAASLRT1071AAELAAIVGE1081DELSASLALR1091CAQELLLANN
1101-11501101WVGAQEALQL1111HESLQGQRLV1121FCLLELLSRH1131LEEKQLSEGK1141SSSSYHTWNT
1151-12001151GTEGPFVERV1161TAVWKSIFSL1171DTPEQYQEAF1181QKLQNIKYPS1191ATNNTPAKQL
1201-12501201LLHICHDLTL1211AVLSQQMASW1221DEAVQALLRA1231VVRSYDSGSF1241TIMQEVYSAF
1251-13001251LPDGCDHLRD1261KLGDHQSPAT1271PAFKSLEAFF1281LYGRLYEFWW1291SLSRPCPNSS
1301-13501301VWVRAGHRTL1311SVEPSQQLDT1321ASTEETDPET1331SQPEPNRPSE1341LDLRLTEEGE
1351-14001351RMLSTFKELF1361SEKHASLQNS1371QRTVAEVQET1381LAEMIRQHQK1391SQLCKSTANG
1401-14501401PDKNEPEVEA1411EQPLCSSQSQ1421CKEEKNEPLS1431LPELTKRLTE1441ANQRMAKFPE
1451-15001451SIKAWPFPDV1461LECCLVLLLI1471RSHFPGCLAQ1481EMQQQAQELL1491QKYGNTKTYR
1501-15081501RHCQTFCM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 16 | WD40/YVTN repeat-like-containing domain superfamily Gem-associated protein 5 | - | - |
Deep-Palm: 0.63
|
|
| 19 | WD40/YVTN repeat-like-containing domain superfamily Gem-associated protein 5 | - | - |
Deep-Palm: 0.69
|
|
| 82 | - | - | - |
Deep-Palm: 0.10
|
|
| 136 | - | - | - |
Deep-Palm: 0.17
|
|
| 156 | - | - | - |
Deep-Palm: 0.08
|
|
| 159 | - | - | - |
Deep-Palm: 0.15
|
|
| 204 | - | - | - |
Deep-Palm: 0.35
|
|
| 211 | - | - | - |
Deep-Palm: 0.26
|
|
| 240 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.53
|
|
| 256 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.84
|
|
| 303 | - | - | - |
Deep-Palm: 0.37
|
|
| 341 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.94
|
|
| 363 | - | - | - |
Deep-Palm: 0.67
|
|
| 371 | - | - | - |
Deep-Palm: 0.65
|
|
| 433 | - | - | - |
Deep-Palm: 0.63
|
|
| 441 | - | - | - |
GPS-Palm: 0.71
Deep-Palm: 0.86
|
|
| 501 | - | - | - |
Deep-Palm: 0.95
|
|
| 572 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.18
|
|
| 676 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.95
|
|
| 687 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.88
|
|
| 697 | - | - | - |
Deep-Palm: 0.34
|
|
| 706 | - | - | - |
Deep-Palm: 0.05
|
|
| 793 | - | - | - |
GPS-Palm: 0.71
Deep-Palm: 0.95
|
|
| 806 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.93
|
|
| 867 | - | - | - |
Deep-Palm: 0.92
|
|
| 973 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.59
|
|
| 1045 | - | - | - |
Deep-Palm: 0.94
|
|
| 1051 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.94
|
|
| 1091 | - | - | - |
Deep-Palm: 0.98
|
|
| 1122 | SWISSPALM DBPTM CYSMODDB | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.98
|
| 1205 | - | - | - |
Deep-Palm: 0.75
|
|
| 1255 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.73
|
|
| 1296 | - | - | - |
Deep-Palm: 0.77
|
|
| 1394 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.82
|
|
| 1415 | - | - | - |
Deep-Palm: 0.74
|
|
| 1421 | - | - | - |
Deep-Palm: 0.94
|
|
| 1463 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.93
|
|
| 1464 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.96
|
|
| 1477 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.94
|
|
| 1503 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.02
|
|
| 1507 | - | - | - |
GPS-Palm: 0.97
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.400
2
PC3
Specificity: 0.333
2/2 (100.0%)
1
HAP1 cell
Specificity: 0.167
1/1 (100.0%)
1
U937 cell
Specificity: 0.167
1/1 (100.0%)
1
293T cell
Specificity: 0.167
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Jurkat T cells (Mass)
Specificity: 0.167
1/10 (10.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 82 | C → C | 0.001887 | SNP | Silent | UCEC |
| 200 | S → C | 0.002033 | SNP | Missense Mutation | LUSC |
| 284 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 706 | C → Vfs*44 | 0.002288 | DEL | Frame Shift Del | STAD |
| 806 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 973 | C → Y | 0.006944 | SNP | Missense Mutation | TGCT |
| 983 | S → C | 0.003460 | SNP | Missense Mutation | CESC |
| 1145 | Y → C | 0.002506 | SNP | Missense Mutation | COAD |
| 1205 | C → C | 0.002506 | SNP | Silent | COAD |
| 1284 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 1421 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |