Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VBT0 | Tmx1 | Thioredoxin-related transmembrane protein 1 (Protein … | Mus musculus (Mouse) | 278 aa |
Protein Details: Q8VBT0 (Tmx1)
Protein Information
| Accession | Q8VBT0 |
|---|---|
| Protein Names | Thioredoxin-related transmembrane protein 1 (Protein disulfide-isomerase TMX1) (EC 5.3.4.1) (Thioredoxin domain-containing protein 1) |
| Gene Symbol | Tmx1 |
| Organism | Mus musculus (Mouse) |
| Length | 278 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29217618 29575903 29733200 31772009 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAHLGRLMVP11LAALVLLLWA21VPGAHGRRNN31VRVLTDENWT41SLLEGEWMIE
51-10051FYAPWCPACQ61NLQPEWESFA71EWGEDLEVKV81AKVDVTEQTG91LSGRFIITAL
101-150101PSIYHCKDGE111FRRYVGPRTK121KDFINFVSDK131EWKNIEPISS141WFGPSSVLMT
151-200151MMSALFQLSV161YIRTSHSYFV171HDLGIPAWGS181YLVFAFATVL191SGLLLGLCMI
201-250201FVADCLCPSK211RRKPQQQYAK221KTSPEFSQPL231KKVEEEQEAD241EEDVSEEEAE
251-278251DREGASKATS261QSSIRQRCVG271LPSATDTS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 56 | - | - | - |
Deep-Palm: 0.06
|
|
| 59 | - | - | - |
Deep-Palm: 0.03
|
|
| 106 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
liver
(26165157)
|
NSC
(31772009)
Brain
(35358180)
|
Deep-Palm: 0.96
|
| 198 | - | - | - |
Deep-Palm: 0.82
|
|
| 205 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.97
|
|
| 207 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.97
|
|
| 268 | - |
brain
(39008777)
MLE
(39008777)
| - |
Deep-Palm: 0.09
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.462
6
Liver
Specificity: 0.158
6/6 (100.0%)
2
Raw 264.7
Specificity: 0.053
2/2 (100.0%)
2
Brain
Specificity: 0.053
2/2 (100.0%)
2
Testis
Specificity: 0.053
2/2 (100.0%)
1
NSC
Specificity: 0.026
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.960
24
Brain tissue (Mass)
Specificity: 0.632
24/56 (42.9%)
1
Neural Stem Cells (Mass)
Specificity: 0.026
1/1 (100.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.