Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VBZ3 | Clptm1 | Putative lipid scramblase CLPTM1 (Cleft … | Mus musculus (Mouse) | 664 aa |
Protein Details: Q8VBZ3 (Clptm1)
Protein Information
| Accession | Q8VBZ3 |
|---|---|
| Protein Names | Putative lipid scramblase CLPTM1 (Cleft lip and palate transmembrane protein 1 homolog) (Thymic epithelial cell surface antigen) |
| Gene Symbol | Clptm1 |
| Organism | Mus musculus (Mouse) |
| Length | 664 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34200797 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAAAQEADGA11GSAVVAAGGG21SSGQVTSNGS31IGRDTPAETQ41PQNPPPQPAP
51-10051NAWQVIKGVL61FRIFIIWAIS71SWFRRGPSPQ81DQSGPGGAPR91VASRNLFPKD
101-150101TLMNLHVYIS111EHEHFTDFNA121TSALFWEQHD131LVYGDWTSGE141NSDGCYEHFA
151-200151ELDIPQSVQQ161NGSIYIHVYF171TKSGFHPDPR181QKALYRRLAT191VHMSRMINKY
201-250201KRRRFQKTKN211LLTGETEADP221EMIKRAEDYG231PVEVISHWHP241NITINIVDDH
251-300251TPWVKGSVPP261PLDQYVKFDA271VSGDYYPIIY281FNDYWNLQKD291YYPINESLAS
301-350301LPLRVSFCPL311SLWRWQLYAA321QSTKSPWNFL331GDELYEQSDE341EQDSVKVALL
351-400351ETSPYLLALT361IIVSIVHSVF371EFLAFKNDIQ381FWNSRQSLEG391LSVRSVFFGV
401-450401FQSFVVLLYI411LDNETNFVVQ421VSVFIGVLID431LWKITKVMDV441RLDREHRVAG
451-500451IFPCPTFKDK461STYIESSTKV471YDDMAFRYLS481WILFPLLGCY491AVYSLLYLEH
501-550501KGWYSWVLSM511LYGFLLTFGF521ITMTPQLFIN531YKLKSVAHLP541WRMLTYKALN
551-600551TFIDDLFAFV561IKMPVMYRIG571CLRDDVVFFI581YLYQRWIYRV591DPTRVNEFGM
601-650601SGEDVSAAAS611RAQASTAAGA621LTPAPSTAVS631GEDASTVPKA641TSGACTASQP
651-664651QEAPPKPAED661KKKD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 145 | - | - | - |
Deep-Palm: 0.08
|
|
| 308 | SWISSPALM DBPTM CYSMODDB | Cleft lip and palate transmembrane protein 1 (CLPTM1) |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.96
Deep-Palm: 0.96
|
| 454 | SWISSPALM DBPTM CYSMODDB | Cleft lip and palate transmembrane protein 1 (CLPTM1) |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.87
|
| 489 | - | - | - |
Deep-Palm: 0.56
|
|
| 571 | - | - | - |
Deep-Palm: 0.31
|
|
| 645 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.91
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
4
Liver
Specificity: 0.138
4/4 (100.0%)
2
Brain
Specificity: 0.069
2/2 (100.0%)
2
Testis
Specificity: 0.069
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
21
Brain tissue (Mass)
Specificity: 0.724
21/56 (37.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.