Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VC82 | Rhbdl1 | Rhomboid-related protein 1 (RRP) (EC … | Mus musculus (Mouse) | 373 aa |
Protein Details: Q8VC82 (Rhbdl1)
Protein Information
| Accession | Q8VC82 |
|---|---|
| Protein Names | Rhomboid-related protein 1 (RRP) (EC 3.4.21.105) (Rhomboid-like protein 1) |
| Gene Symbol | Rhbdl1 |
| Organism | Mus musculus (Mouse) |
| Length | 373 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDRSSLLQLI11QEQQLDPENT21GFIGADTFAG31LVHSHELPLD41PTKLDMLVAL
51-10051AQSNERGQVC61YQELVDLISS71KRSSSFKRAI81ANGQRALPRD91GLLDEPGLSV
101-150101YKRFVRYVAY111EILPCEVDRR121WYFYRHRTCP131PPVFMASVTL141AQIIVFLCYG
151-200151ARLNKWVLQT161YHPEYMKSPL171VYHPGHRARA181WRFLTYMFMH191VGLEQLGFNA
201-250201LLQLMIGVPL211EMVHGVLRIS221LLYLAGVLAG231SLTVSITDMR241APVVGGSGGV
251-300251YALCSAHLAN261VVMNWAGMRC271PYKLLRMVLA281LVCMSSEVGR291AVWLRFSPPL
301-350301PASGPQPSFM311AHLAGAVVGV321SMGLTILRSY331EERLRDQCGW341WVVLLAYGTF
351-373351LLFAIFWNVF361AYDLLGADIP371PPP
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 60 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.97
|
|
| 115 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.33
|
| 129 | - | - | - |
Deep-Palm: 0.33
|
|
| 148 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.66
|
|
| 254 | - | - | - |
Deep-Palm: 0.94
|
|
| 270 | - | - | - |
Deep-Palm: 0.74
|
|
| 283 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.93
|
|
| 338 | - | - | - |
Deep-Palm: 0.90
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Brain tissue (Mass)
Specificity: 1.000
2/56 (3.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.