Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VDJ3 | Hdlbp | Vigilin (High density lipoprotein-binding protein) … | Mus musculus (Mouse) | 1268 aa |
Protein Details: Q8VDJ3 (Hdlbp)
Protein Information
| Accession | Q8VDJ3 |
|---|---|
| Protein Names | Vigilin (High density lipoprotein-binding protein) (HDL-binding protein) |
| Gene Symbol | Hdlbp |
| Organism | Mus musculus (Mouse) |
| Length | 1268 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSSVAVLTQE11SFAEHRSGLV21PQQIKVATLN31SEEENDPPTY41KDAFPPLPEK
51-10051AACLESAQEP61AGAWSNKIRP71IKASVITQVF81HVPLEERKYK91DMNQFGEGEQ
101-150101AKICLEIMQR111TGAHLELSLA121KDQGLSIMVS131GKLDAVMKAR141KDIVARLQTQ
151-200151ASATVPIPKE161HHRFVIGKNG171EKLQDLELKT181ATKIQIPRPD191DPSNQIKITG
201-250201TKEGIEKARH211EVLLISAEQD221KRAVERLEVE231KAFHPFIAGP241YNRLVGEIMQ
251-300251ETGTRINIPP261PSVNRTEIVF271TGEKEQLAQA281VARIKKIYEE291KKKKTTTIAV
301-350301EVKKSQHKYV311IGPKGNSLQE321ILERTGVSVE331IPPSDSISET341VILRGEPEKL
351-400351GQALTEVYAK361ANSFTVSSVS371APSWLHRFII381GKKGQNLAKI391TQQMPKVHIE
401-450401FTEGEDKITL411EGPTEDVNVA421QEQIEGMVKD431LINRMDYVEI441NIDHKFHRHL
451-500451IGKSGANINR461IKDQYKVSVR471IPPDSEKSNL481IRIEGDPQGV491QQAKRELLEL
501-550501ASRMENERTK511DLIIEQRFHR521TIIGQKGERI531REIRDKFPEV541IINFPDPAQK
551-600551SDIVQLRGPK561NEVEKCTKYM571QKMVADLVEN581SYSISVPIFK591QFHKNIIGKG
601-650601GANIKKIREE611SNTKIDLPAE621NSNSETIIIT631GKRANCEAAR641SRILSIQKDL
651-700651ANIAEVEVSI661PAKLHNSLIG671TKGRLIRSIM681EECGGVHIHF691PVEGSGSDTV
701-750701VIRGPSSDVE711KAKKQLLHLA721EEKQTKSFTV731DIRAKPEYHK741FLIGKGGGKI
751-800751RKVRDSTGAR761IIFPAAEDKD771QDLITIIGKE781DAVREAQKEL791EALIQNLENV
801-850801VEDYMLVDPK811HHRHFVIRRG821QVLREIAEEY831GGVMVSFPRS841GTQSDKVTLK
851-900851GAKDCVEAAK861KRIQEIIEDL871EAQVTVECAI881PQKFHRSVMG891PKGSRIQQIT
901-950901RDYNVQIKFP911DREENPVHSV921EPSIQENGDE931AGEGREAKET941DPGSPRRCDI
951-1000951IIISGRKEKC961EAAKEALEAL971VPVTIEVEVP981FDLHRYIIGQ991KGSGIRKMMD
1001-10501001EFEVNIHVPA1011PELQSDTIAI1021TGLAANLDRA1031KAGLLDRVKE1041LQAEQEDRAL
1051-11001051RSFKLSVTVD1061PKYHPKIIGR1071KGAVITQIRL1081EHEVNIQFPD1091KDDGNQPQDQ
1101-11501101ITITGYEKNT1111EAARDAILKI1121VGELEQMVSE1131DVPLDHRVHA1141RIIGARGKAI
1151-12001151RKIMDEFKVD1161IRFPQSGAPD1171PNCVTVTGLP1181ENVEEAIDHI1191LNLEEEYLAD
1201-12501201VVDSEALQVY1211MKPPAHEESR1221APSKGFVVRD1231APWTSNSSEK1241APDMSSSEEF
1251-12681251PSFGAQVAPK1261TLPWGPKR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 53 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
MLE
(39008777)
| - |
Deep-Palm: 0.91
|
| 104 | SWISSPALM DBPTM CYSMODDB | Vigilin KH domain |
Liver
(28526873)
| - |
GPS-Palm: 0.90
Deep-Palm: 0.77
|
| 566 | - | - | - |
Deep-Palm: 0.73
|
|
| 636 | - | - | - |
Deep-Palm: 0.91
|
|
| 683 | - | - | - |
Deep-Palm: 0.89
|
|
| 855 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.95
|
|
| 878 | - | - | - |
Deep-Palm: 0.85
|
|
| 948 | SWISSPALM DBPTM CYSMODDB | - |
liver
(26165157)
| - |
Deep-Palm: 0.94
|
| 960 | - | - | - |
Deep-Palm: 0.97
|
|
| 1173 | - | - | - |
Deep-Palm: 0.77
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Liver
Specificity: 1.000
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.