Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VDM4 | Psmd2 | 26S proteasome non-ATPase regulatory subunit … | Mus musculus (Mouse) | 908 aa |
Protein Details: Q8VDM4 (Psmd2)
Protein Information
| Accession | Q8VDM4 |
|---|---|
| Protein Names | 26S proteasome non-ATPase regulatory subunit 2 (26S proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) |
| Gene Symbol | Psmd2 |
| Organism | Mus musculus (Mouse) |
| Length | 908 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34884899 35358180 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MEEGGRDKTP11VQSQQPSATT21PSGADEKSSG31KERRDAGEKD41KEQELSEEDK
51-10051QLQDELEMLV61ERLGEKDTSL71YRPALEELRR81QIRSSTTSMT91SVPKPLKFLR
101-150101PHYGKLKEIY111ENMAPGENKC121FAADIISVLA131MTMSGERECL141KYRLVGSQEE
151-200151LASWGHEYVR161HLAGEVAKEW171QELDDAEKAQ181REPLLTLVKE191IVPYNMAHNA
201-250201EHEACDLLME211IEQVDMLEKD221IDENAYAKVC231LYLTSCVNYV241PEPENSALLR
251-300251CALGVFRKFS261RFPEALRLAL271MLNDMELVED281IFTSCKDVVV291QKQMAFMLGR
301-350301HGVFLELSED311VEEYEDLTEI321MSNVQLNSNF331LALARELDIM341EPKVPDDIYK
351-400351THLENNRFGG361SGSQVDSARM371NLASSFVNGF381VNAAFGQDKL391LTDDGNKWLY
401-450401KNKDHGMLSA411AASLGMILLW421DVDGGLTQID431KYLYSSEDYI441KSGALLACGI
451-500451VNSGVRNECD461PALALLSDYV471LHNSNTMRLG481SIFGLGLAYA491GSNREDVLTL
501-550501LLPVMGDSKS511SMEVAGVTAL521ACGMIAVGSC531NGDVTSTILQ541TIMEKSETEL
551-600551KDTYARWLPL561GLGLNHLGKG571EAIEAILAAL581EVVSEPFRSF591ANTLVDVCAY
601-650601AGSGNVLKVQ611QLLHICSEHF621DSKEKEEDKD631KKEKKDKDKK641EAPADMGAHQ
651-700651GVAVLGIALI661AMGEEIGAEM671ALRTFGHLLR681YGEPTLRRAV691PLALALISVS
701-750701NPRLNILDTL711SKFSHDADPE721VSYNSIFAMG731MVGSGTNNAR741LAAMLRQLAQ
751-800751YHAKDPNNLF761MVRLAQGLTH771LGKGTLTLCP781YHSDRQLMSQ791VAVAGLLTVL
801-850801VSFLDVRNII811LGKSHYVLYG821LVAAMQPRML831VTFDEELRPL841PVSVRVGQAV
851-900851DVVGQAGKPK861TITGFQTHTT871PVLLAHGERA881ELATEEFLPV891TPILEGFVIL
901-908901RKNPNYDL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 120 | - | - | - |
Deep-Palm: 0.36
|
|
| 139 | - | - | - |
Deep-Palm: 0.94
|
|
| 205 | - | - | - |
Deep-Palm: 0.14
|
|
| 230 | - | - | - |
Deep-Palm: 0.23
|
|
| 236 | - | - | - |
Deep-Palm: 0.69
|
|
| 251 | - | - | - |
Deep-Palm: 0.91
|
|
| 285 | - | - | - |
Deep-Palm: 0.51
|
|
| 448 | SWISSPALM DBPTM CYSMODDB | Proteasome/cyclosome repeat |
Liver
(28526873)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.97
|
| 459 | SWISSPALM DBPTM CYSMODDB | Proteasome/cyclosome repeat |
Liver
(28526873)
| - |
Deep-Palm: 0.95
|
| 522 | - | - | - |
Deep-Palm: 0.83
|
|
| 530 | - | - | - |
Deep-Palm: 0.96
|
|
| 598 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Liver
(34884899)
|
Deep-Palm: 0.87
|
| 616 | - | - | - |
Deep-Palm: 0.92
|
|
| 779 | - | - | - |
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
6
Liver
Specificity: 0.750
6/6 (100.0%)
2
Brain
Specificity: 0.250
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.