Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VDS4 | Rprd1a | Regulation of nuclear pre-mRNA domain-containing … | Mus musculus (Mouse) | 312 aa |
Protein Details: Q8VDS4 (Rprd1a)
Protein Information
| Accession | Q8VDS4 |
|---|---|
| Protein Names | Regulation of nuclear pre-mRNA domain-containing protein 1A (Cyclin-dependent kinase inhibitor 2B-related protein) (p15INK4B-related protein) |
| Gene Symbol | Rprd1a |
| Organism | Mus musculus (Mouse) |
| Length | 312 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSAFSEAALE11KKLSELSNSQ21QSVQTLSLWL31IHHRKHSRPI41VTVWERELRK
51-10051AKPNRKLTFL61YLANDVIQNS71KRKGPEFTKD81FAPVIVEAFK91HVSSETDESC
101-150101KKHLGRVLSI111WEERSVYEND121VLEQLKHALY131GDKKARKRTY141EQIKVDENEN
151-200151CSSLGSPSEP161PQTLDLVRAL171QDLENAASGD181AAVHQRIASL191PVEVQEVSLL
201-250201EKITDKESGE211RLSKMVEDAC221MLLADYNGRL231AAEIDDRKQL241TRMLADFLRC
251-300251QKEALAEKEH261KLEEYKRKLA271RVSLVRKELR281ARIQSLPDLS291RLPNVTGSHM
301-312301HLPFAGDIYS311ED
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 100 | - | - | - |
Deep-Palm: 0.92
|
|
| 151 | - | - | - |
Deep-Palm: 0.56
|
|
| 220 | SWISSPALM DBPTM CYSMODDB | Cell-cycle alteration and expression-elevated protein in tumour |
Forebrain
(28680068)
| - |
GPS-Palm: 0.91
Deep-Palm: 0.96
|
| 250 | - | - | - |
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Testis
Specificity: 1.000
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.