Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q8VE09 | Ttc39c | Tetratricopeptide repeat protein 39C (TPR … | Mus musculus (Mouse) | 580 aa |
Protein Details: Q8VE09 (Ttc39c)
Protein Information
| Accession | Q8VE09 |
|---|---|
| Protein Names | Tetratricopeptide repeat protein 39C (TPR repeat protein 39C) |
| Gene Symbol | Ttc39c |
| Organism | Mus musculus (Mouse) |
| Length | 580 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAGSEEQWPR11RREDGDPDAA21AAPLQDAELA31LAGINMLLNN41GFRESDQLFK
51-10051QYRNHSPLMS61FGASFVSFLN71AMMTFEEEKM81QLACDDLKTT91EKLCESEEAG
101-150101VIETIKNKIK111KNVDARKSTP121SMVDRLQRQI131IIADCQVYLA141VLSFVKQELS
151-200151AYIKGGWILR161KAWKIYSKCY171VDINALQELY181QKKLTEEPLA191SDAANDNHVV
201-250201AEGVTEESLS211RLKGAVSFGY221GLFHLCISMV231PPNLLKIINL241LGFPGDRLQG
251-300251LSSLTYASES261KDMKAPLATL271ALLWYHTVVR281PFFALDGSDN291KGGLDEAKAI
301-350301LLRKESAYPN311SSLFMFFKGR321IQRLECQINS331ALTSFHTALE341LAVDQREIQH
351-400351VCLYEIGWCS361MIELNFKDAF371DSFERLKNES381RWSQCYYAYL391TAVCQGATGD
401-450401VDGAQLVFKE411VQKLFKRKNN421QIEQFSVKKA431ERFRKQTPTR441ALCVLASIEV
451-500451LYLWKALPNC461SFPNLQRMSQ471ACHEVDDSSV481VGLKHLLLGA491IHKCLGNSQD
501-550501ALQFFQRAAR511DELCRQSNSY521VPPYACYELG531CLLLDSAETV541GRGRTLLLQA
551-580551KEDFSGYDFE561NRLHVRIHAA571LASLRELVPQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 84 | SWISSPALM DBPTM CYSMODDB | Iml2/Tetratricopeptide repeat protein 39 |
Liver
(28526873)
| - |
GPS-Palm: 0.70
Deep-Palm: 0.77
|
| 94 | SWISSPALM DBPTM CYSMODDB | Iml2/Tetratricopeptide repeat protein 39 |
Liver
(28526873)
| - |
Deep-Palm: 0.93
|
| 135 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.75
|
|
| 169 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.85
|
|
| 226 | - | - | - |
Deep-Palm: 0.94
|
|
| 326 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.85
|
|
| 352 | - | - | - |
Deep-Palm: 0.53
|
|
| 359 | - | - | - |
Deep-Palm: 0.06
|
|
| 385 | - | - | - |
Deep-Palm: 0.72
|
|
| 394 | - | - | - |
Deep-Palm: 0.45
|
|
| 443 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.97
|
|
| 460 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.95
Deep-Palm: 0.68
|
| 472 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Liver
(34884899)
|
Deep-Palm: 0.80
|
| 494 | - | - |
Liver
(34884899)
|
GPS-Palm: 0.79
Deep-Palm: 0.97
|
|
| 514 | - | - | - |
Deep-Palm: 0.62
|
|
| 526 | - | - | - |
Deep-Palm: 0.94
|
|
| 531 | - | - | - |
Deep-Palm: 0.92
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Liver
Specificity: 1.000
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.