Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q91VR5 | Ddx1 | ATP-dependent RNA helicase DDX1 (EC … | Mus musculus (Mouse) | 740 aa |
Protein Details: Q91VR5 (Ddx1)
Protein Information
| Accession | Q91VR5 |
|---|---|
| Protein Names | ATP-dependent RNA helicase DDX1 (EC 3.6.4.13) (DEAD box protein 1) |
| Gene Symbol | Ddx1 |
| Organism | Mus musculus (Mouse) |
| Length | 740 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAAFSEMGVM11PEIAQAVEEM21DWLLPTDIQA31ESIPLILGGG41DVLMAAETGS
51-10051GKTGAFSIPV61IQIVYETLKD71QQEGKKGKTT81IKTGASVLNK91WQMNPYDRGS
101-150101AFAIGSDGLC111CQSREVKEWH121GCRGTRGLLK131GKHYYEVSCH141DQGLCRVGWS
151-200151TMQASLDLGT161DKFGFGFGGT171GKKSHNKQFD181NYGEEFTMHD191TIGCYLDIDK
201-250201GHVKFSKNGK211DLGLAFEIPA221HIKNQALFPA231CVLKNAELKF241NFGEEEFKFP
251-300251PKDGFVALSK261APDNYIVKSQ271HTGNAQVSQT281KFLPNAPKAL291IVEPSRELAE
301-350301QTLNNVKQFK311KYIDNPKLRE321LLIIGGVAAR331DQLSVLDNGV341DIVVGTPGRL
351-400351DDLVSTGKLN361LSQVRFLVLD371EADGLLSQGY381SDFINRMHNQ391IPQITCDGKR
401-450401LQVIVCSATL411HSFDVKKLSE421KIMHFPTWVD431LKGEDSVPDT441VHHVVVPVNP
451-500451KTDKLWERLG461KNHIRTDDVH471AKDNTRPGAN481SPEMWSEAIK491ILKGEYAVRA
501-550501IKEHKMDQAI511IFCRTKIDCD521NLEQYFMQQG531GGPDKKGHQF541SCVCLHGDRK
551-600551PHERKQNLER561FKKGDVRFLI571CTDVAARGID581IHGVPYVINV591TLPDEKQNYV
601-650601HRIGRVGRAE611RMGLAISLVA621TEKEKVWYHV631CSNRGKGCYN641TRLKEDGGCT
651-700651IWYNEMQLLS661EIEEHLNCTI671SQVEPDIKVP681VDEFDGKVTY691GQKRAAGGGN
701-740701YKGHVDVLAP711TVQELAALEK721EAQTSFLHLG731YLPNQLFRTF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 110 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.78
|
|
| 111 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.84
|
|
| 122 | - | - | - |
Deep-Palm: 0.48
|
|
| 139 | - | - | - |
Deep-Palm: 0.21
|
|
| 145 | - | - | - |
Deep-Palm: 0.08
|
|
| 194 | - | - | - |
Deep-Palm: 0.09
|
|
| 231 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.87
|
|
| 396 | - | - | - |
Deep-Palm: 0.29
|
|
| 406 | SWISSPALM DBPTM CYSMODDB | - |
liver
(26165157)
| - |
Deep-Palm: 0.94
|
| 513 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.21
|
| 519 | - | - | - |
Deep-Palm: 0.05
|
|
| 542 | - | - | - |
Deep-Palm: 0.42
|
|
| 544 | - | - | - |
Deep-Palm: 0.57
|
|
| 571 | SWISSPALM DBPTM CYSMODDB | Helicase conserved C-terminal domain |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.92
Deep-Palm: 0.93
|
| 631 | - | - | - |
Deep-Palm: 0.68
|
|
| 638 | - | - | - |
Deep-Palm: 0.08
|
|
| 649 | - | - | - |
Deep-Palm: 0.40
|
|
| 668 | - | - | - |
Deep-Palm: 0.36
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.545
6
Liver
Specificity: 0.300
6/6 (100.0%)
3
Brain
Specificity: 0.150
3/3 (100.0%)
2
Testis
Specificity: 0.100
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
9
Brain tissue (Mass)
Specificity: 0.450
9/56 (16.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.