Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q921F2 | Tardbp | TAR DNA-binding protein 43 (TDP-43) | Mus musculus (Mouse) | 414 aa |
Protein Details: Q921F2 (Tardbp)
Protein Information
| Accession | Q921F2 |
|---|---|
| Protein Names | TAR DNA-binding protein 43 (TDP-43) |
| Gene Symbol | Tardbp |
| Organism | Mus musculus (Mouse) |
| Length | 414 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29217618 29733200 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSEYIRVTED11ENDEPIEIPS21EDDGTVLLST31VTAQFPGACG41LRYRNPVSQC
51-10051MRGVRLVEGI61LHAPDAGWGN71LVYVVNYPKD81NKRKMDETDA91SSAVKVKRAV
101-150101QKTSDLIVLG111LPWKTTEQDL121KDYFSTFGEV131LMVQVKKDLK141TGHSKGFGFV
151-200151RFTEYETQVK161VMSQRHMIDG171RWCDCKLPNS181KQSPDEPLRS191RKVFVGRCTE
201-250201DMTAEELQQF211FCQYGEVVDV221FIPKPFRAFA231FVTFADDKVA241QSLCGEDLII
251-300251KGISVHISNA261EPKHNSNRQL271ERSGRFGGNP281GGFGNQGGFG291NSRGGGAGLG
301-350301NNQGGNMGGG311MNFGAFSINP321AMMAAAQAAL331QSSWGMMGML341ASQQNQSGPS
351-400351GNNQSQGSMQ361REPNQAFGSG371NNSYSGSNSG381APLGWGSASN391AGSGSGFNGG
401-414401FGSSMDSKSS411GWGM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 39 | TAR DNA-binding protein 43, N-terminal |
brain
(39008777)
MLE
(39008777)
| - |
Deep-Palm: 0.97
|
|
| 50 | SWISSPALM DBPTM CYSMODDB | TAR DNA-binding protein 43, N-terminal TAR DNA-binding protein 43 N-terminal domain |
Liver
(28526873)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.92
|
| 173 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.12
|
|
| 175 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.16
|
|
| 198 | - | - | - |
Deep-Palm: 0.75
|
|
| 212 | - | - | - |
Deep-Palm: 0.17
|
|
| 244 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.87
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
6
Liver
Specificity: 0.353
6/6 (100.0%)
1
Raw 264.7
Specificity: 0.059
1/1 (100.0%)
1
Brain
Specificity: 0.059
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
9
Brain tissue (Mass)
Specificity: 0.529
9/56 (16.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.