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Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
Q96D46 NMD3 60S ribosomal export protein NMD3 … Homo sapiens (Human) 503 aa

Protein Details: Q96D46 (NMD3)

Protein Information
AccessionQ96D46
Protein Names60S ribosomal export protein NMD3 (hNMD3)
Gene SymbolNMD3
OrganismHomo sapiens (Human)
Length503 aa
IsoformsNo isoforms
Related PMIDs 29733200
Database SourcesNo database sources
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
1-501MEYMAESTDR11SPGHILCCEC21GVPISPNPAN31ICVACLRSKV41DISQGIPKQV
51-10051SISFCKQCQR61YFQPPGTWIQ71CALESRELLA81LCLKKIKAPL91SKVRLVDAGF
101-150101VWTEPHSKRL111KVKLTIQKEV121MNGAILQQVF131VVDYVVQSQM141CGDCHRVEAK
151-200151DFWKAVIQVR161QKTLHKKTFY171YLEQLILKYG181MHQNTLRIKE191IHDGLDFYYS
201-250201SKQHAQKMVE211FLQCTVPCRY221KASQRLISQD231IHSNTYNYKS241TFSVEIVPIC
251-300251KDNVVCLSPK261LAQSLGNMNQ271ICVCIRVTSA281IHLIDPNTLQ291VADIDGSTFW
301-350301SHPFNSLCHP311KQLEEFIVME321CSIVQDIKRA331AGAGMISKKH341TLGEVWVQKT
351-400351SEMNTDKQYF361CRTHLGHLLN371PGDLVLGFDL381ANCNLNDEHV391NKMNSDRVPD
401-450401VVLIKKSYDR411TKRQRRRNWK421LKELAREREN431MDTDDERQYQ441DFLEDLEEDE
451-500451AIRKNVNIYR461DSAIPVESDT471DDEGAPRISL481AEMLEDLHIS491QDATGEEGAS
501-503501MLT
Palmitoylation Sites Details
Position Database Domains Literature (PMID/Cell-Tissue) Mass(PMID/Cell-Tissue) Prediction Scores
17 - - -
Deep-Palm: 0.11
18 Ribosomal export protein Nmd3 - -
Deep-Palm: 0.09
20 Ribosomal export protein Nmd3 - -
Deep-Palm: 0.12
32 Nmd3, N-terminal Ribosomal export protein Nmd3 - -
GPS-Palm: 0.89
Deep-Palm: 0.85
35 Nmd3, N-terminal Ribosomal export protein Nmd3 - -
GPS-Palm: 0.88
Deep-Palm: 0.89
55 - - -
GPS-Palm: 0.84
Deep-Palm: 0.12
58 - - -
GPS-Palm: 0.80
Deep-Palm: 0.08
71 - - -
Deep-Palm: 0.95
82 - - -
GPS-Palm: 0.96
Deep-Palm: 0.98
141 - - -
Deep-Palm: 0.14
144 - - -
Deep-Palm: 0.16
214 - - -
GPS-Palm: 0.90
Deep-Palm: 0.63
218 - - -
GPS-Palm: 0.90
Deep-Palm: 0.48
250 - - -
Deep-Palm: 0.84
256 - - -
GPS-Palm: 0.69
Deep-Palm: 0.80
272 - - -
GPS-Palm: 0.79
Deep-Palm: 0.62
274 - - -
GPS-Palm: 0.89
Deep-Palm: 0.31
308 - - -
Deep-Palm: 0.05
321 - - -
GPS-Palm: 0.85
Deep-Palm: 0.78
361 - - -
Deep-Palm: 0.45
383 - - -
GPS-Palm: 0.71
Deep-Palm: 0.83
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
293T cell
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID). Blue bars: Literature data, Orange bars: Mass Spectrometry data. The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
35 C → G 0.002747 SNP Missense Mutation LIHC
68 W → C 0.002033 SNP Missense Mutation LUSC
141 C → C 0.001887 SNP Silent UCEC
187 R → C 0.002141 SNP Missense Mutation SKCM
187 R → C 0.001887 SNP Missense Mutation UCEC
321 C → C 0.002747 SNP Silent LIHC
361 C → Vfs*9 0.002288 DEL Frame Shift Del STAD