Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q96DZ5 | CLIP3; CLIPR59 | CAP-Gly domain-containing linker protein 3 … | Homo sapiens (Human) | 547 aa |
Protein Details: Q96DZ5 (CLIP3)
Protein Information
| Accession | Q96DZ5 |
|---|---|
| Protein Names | CAP-Gly domain-containing linker protein 3 (Cytoplasmic linker protein 170-related 59 kDa protein) (CLIP-170-related 59 kDa protein) (CLIPR-59) |
| Gene Symbol | CLIP3; CLIPR59 |
| Organism | Homo sapiens (Human) |
| Length | 547 aa |
| Isoforms | No isoforms |
| Related PMIDs | 26111759 |
| Database Sources | dbPTM SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
Bubble Size: Positive Samples Count
Color Intensity: Positive Ratio
2
Jurkat T cells
Specificity: 1.000
2/25 (8.0%)
0
U937 cells
Specificity: 0.000
0/1 (0.0%)
0
DU145 cells
Specificity: 0.000
0/2 (0.0%)
0
HeLa cells
Specificity: 0.000
0/1 (0.0%)
0
LNCaP cells
Specificity: 0.000
0/46 (0.0%)
0
PC3 cells
Specificity: 0.000
0/4 (0.0%)
0
T cells
Specificity: 0.000
0/4 (0.0%)
0
HAP1 cells
Specificity: 0.000
0/10 (0.0%)
0
293T cells
Specificity: 0.000
0/10 (0.0%)
0
CEMx174 cells
Specificity: 0.000
0/3 (0.0%)
0
Endothelial cells
Specificity: 0.000
0/2 (0.0%)
0
Prefrontal cortex
Specificity: 0.000
0/1 (0.0%)
0
Cerebral cortex
Specificity: 0.000
0/4 (0.0%)
0
Liver membrane
Specificity: 0.000
0/1 (0.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Bars are grouped by tissue/cell line for easy comparison.
Protein Sequence
Single Types:
Experimental Database High Prediction Medium Prediction Low Prediction
Experimental Database High Prediction Medium Prediction Low Prediction
Combined Types:
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
1-501MTKTDPAPMA11PPPRGEEEEE21EEEDEPVPEA31PSPTQERRQK41PVVHPSAPAP
51-10051LPKDYAFTFF61DPNDPACQEI71LFDPQTTIPE81LFAIVRQWVP91QVQHKIDVIG
101-150101NEILRRGCHV111NDRDGLTDMT121LLHYACKAGA131HGVGDPAAAV141RLSQQLLALG
151-200151ADVTLRSRWT161NMNALHYAAY171FDVPDLVRVL181LKGARPRVVN191STCSDFNHGS
201-250201ALHIAASSLC211LGAAKCLLEH221GANPALRNRK231GQVPAEVVPD241PMDMSLDKAE
251-300251AALVAKELRT261LLEEAVPLSC271ALPKVTLPNY281DNVPGNLMLS291ALGLRLGDRV
301-350301LLDGQKTGTL311RFCGTTEFAS321GQWVGVELDE331PEGKNDGSVG341GVRYFICPPK
351-400351QGLFASVSKI361SKAVDAPPSS371VTSTPRTPRM381DFSRVTGKGR391REHKGKKKTP
401-450401SSPSLGSLQQ411RDGAKAEVGD421QVLVAGQKQG431IVRFYGKTDF441APGYWYGIEL
451-500451DQPTGKHDGS461VFGVRYFTCP471PRHGVFAPAS481RIQRIGGSTD491SPGDSVGAKK
501-547501VHQVTMTQPK511RTFTTVRTPK521DIASENSISR531LLFCCWFPWM541LRAEMQS
Palmitoylation Sites Details
| Position | Sources | Domains | Experimental PMIDs |
|---|---|---|---|
| 108 | Prediction (Low) | - | - |
| 210 | Prediction (Low) | - | - |
| 216 | Prediction (Medium) | - | - |
| 270 | Prediction (Medium) | - | - |
| 313 | Prediction (Medium) | - | - |
| 347 | Prediction (High) | - | - |
| 469 | Prediction (Low) | - | - |
| 534 | DBPTM SWISSPALM Prediction (Medium) | - | - |
| 535 | DBPTM SWISSPALM Prediction (High) | - | - |
Conservation Scores
PhyloP
PhastCons
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 86 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 295 | R → C | 0.002545 | SNP | Missense Mutation | GBM |
| 433 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 501 | V → Cfs*4 | 0.002288 | DEL | Frame Shift Del | STAD |