Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99805 | TM9SF2 | Transmembrane 9 superfamily member 2 … | Homo sapiens (Human) | 663 aa |
Protein Details: Q99805 (TM9SF2)
Protein Information
| Accession | Q99805 |
|---|---|
| Protein Names | Transmembrane 9 superfamily member 2 (p76) |
| Gene Symbol | TM9SF2 |
| Organism | Homo sapiens (Human) |
| Length | 663 aa |
| Isoforms | No isoforms |
| Related PMIDs | 26111759 29733200 31251020 32944167 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSARLPVLSP11PRWPRLLLLS21LLLLGAVPGP31RRSGAFYLPG41LAPVNFCDEE
51-10051KKSDECKAEI61ELFVNRLDSV71ESVLPYEYTA81FDFCQASEGK91RPSENLGQVL
101-150101FGERIEPSPY111KFTFNKKETC121KLVCTKTYHT131EKAEDKQKLE141FLKKSMLLNY
151-200151QHHWIVDNMP161VTWCYDVEDG171QRFCNPGFPI181GCYITDKGHA191KDACVISSDF
201-250201HERDTFYIFN211HVDIKIYYHV221VETGSMGARL231VAAKLEPKSF241KHTHIDKPDC
251-300251SGPPMDISNK261ASGEIKIAYT271YSVSFEEDDK281IRWASRWDYI291LESMPHTHIQ
301-350301WFSIMNSLVI311VLFLSGMVAM321IMLRTLHKDI331ARYNQMDSTE341DAQEEFGWKL
351-400351VHGDIFRPPR361KGMLLSVFLG371SGTQILIMTF381VTLFFACLGF391LSPANRGALM
401-450401TCAVVLWVLL411GTPAGYVAAR421FYKSFGGEKW431KTNVLLTSFL441CPGIVFADFF
451-500451IMNLILWGEG461SSAAIPFGTL471VAILALWFCI481SVPLTFIGAY491FGFKKNAIEH
501-550501PVRTNQIPRQ511IPEQSFYTKP521LPGIIMGGIL531PFGCIFIQLF541FILNSIWSHQ
551-600551MYYMFGFLFL561VFIILVITCS571EATILLCYFH581LCAEDYHWQW591RSFLTSGFTA
601-650601VYFLIYAVHY611FFSKLQITGT621ASTILYFGYT631MIMVLIFFLF641TGTIGFFACF
651-663651WFVTKIYSVV661KVD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 47 | - | - | - |
Deep-Palm: 0.90
|
|
| 56 | - | - | - |
Deep-Palm: 0.59
|
|
| 84 | - | - |
LNCaP
(31251020)
|
Deep-Palm: 0.90
|
|
| 120 | SWISSPALM DBPTM CYSMODDB | Endomembrane protein 70 | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.60
|
| 124 | SWISSPALM DBPTM CYSMODDB | Endomembrane protein 70 | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.54
|
| 164 | - | - | - |
Deep-Palm: 0.02
|
|
| 174 | SWISSPALM DBPTM CYSMODDB | - |
HeLa
(29575903)
|
cerebral cortex
(36430497)
|
GPS-Palm: 0.67
Deep-Palm: 0.19
|
| 182 | SWISSPALM DBPTM CYSMODDB | - |
HeLa
(29575903)
|
cerebral cortex
(36430497)
|
GPS-Palm: 0.73
Deep-Palm: 0.38
|
| 194 | - | - | - |
Deep-Palm: 0.15
|
|
| 250 | - | - | - |
Deep-Palm: 0.32
|
|
| 387 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.80
|
|
| 402 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.95
|
|
| 441 | - | - | - |
Deep-Palm: 0.65
|
|
| 479 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.96
|
|
| 534 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.36
|
|
| 569 | - | - | - |
Deep-Palm: 0.23
|
|
| 577 | - | - | - |
Deep-Palm: 0.07
|
|
| 582 | - | - | - |
Deep-Palm: 0.09
|
|
| 649 | - | - | - |
Deep-Palm: 0.08
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.333
2
LNCaP
Specificity: 0.286
2/2 (100.0%)
2
Primary T cell
Specificity: 0.286
2/2 (100.0%)
1
HAP1 cell
Specificity: 0.143
1/1 (100.0%)
1
PC3
Specificity: 0.143
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Cerebral Cortex (Mass)
Specificity: 0.143
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 422 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 479 | C → Y | 0.002506 | SNP | Missense Mutation | COAD |