Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99J23 | Ghdc | GH3 domain-containing protein | Mus musculus (Mouse) | 532 aa |
Protein Details: Q99J23 (Ghdc)
Protein Information
| Accession | Q99J23 |
|---|---|
| Protein Names | GH3 domain-containing protein |
| Gene Symbol | Ghdc |
| Organism | Mus musculus (Mouse) |
| Length | 532 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLLLWLLLLL11LLLVPLLAIL21WQQRSRGARP31CWLISLQHRV41AWGMLGWAAA
51-10051WQQWRLDRST61LNVGQSQQQA71LMWCLKKAQG81SCCLPREDTD91MRTFRNHLPL
101-150101TQTSHTQEQE111SEETLPSPAS121PQYHGDASLQ131ATLLGLITLN141KAYPEALAPG
151-200151STACVTPTSP161WPCSVPWLGH171ALGRVSPDGA181KDPRTLLLEA191LISPGLRVLE
201-250201ARTAVELLDV211FVGLEADGEE221LAEAIAAGIL231GTLLPKRAAE241LKEALEQGPR
251-300251GLARRLWPKL261QVVVTLDSGG271QAEAVAALRV281LWCQGLAFFS291PAYAASGGVV
301-350301ALNLWPERPQ311GSYLLPPGVP321FIELLPIKEG331TQEEAASTLL341LTDAQREKEY
351-400351ELVLTNHTSL361TRCRLGDVVQ371VVGTYNQCPV381VRFTCRLGQT391LNVRGEVTDE
401-450401TVFSVALAQA411VGQWPGAKLL421DHVCVESRVL431DSCEGSAPHY441EVFVELRGLR
451-500451NLSEENRDKL461DNCLQEASAQ471YKSLRFRGSV481GPAKVHLVRP491GSFRVLREAL
501-532501AAFSSSSCRP511PEMPRVIRLR521HLAQLLQKRV531IS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 31 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.93
|
|
| 74 | - | - | - |
Deep-Palm: 0.74
|
|
| 82 | - | - | - |
Deep-Palm: 0.38
|
|
| 83 | - | - | - |
Deep-Palm: 0.69
|
|
| 154 | - | - | - |
Deep-Palm: 0.93
|
|
| 163 | - | - | - |
Deep-Palm: 0.52
|
|
| 283 | - | - | - |
Deep-Palm: 0.98
|
|
| 363 | - | - | - |
Deep-Palm: 0.60
|
|
| 378 | SWISSPALM DBPTM CYSMODDB | GH3 family central domain |
Liver
(28526873)
| - |
Deep-Palm: 0.79
|
| 385 | - | - | - |
Deep-Palm: 0.79
|
|
| 424 | - | - | - |
Deep-Palm: 0.90
|
|
| 433 | - | - | - |
Deep-Palm: 0.79
|
|
| 463 | - | - | - |
Deep-Palm: 0.95
|
|
| 508 | - | - | - |
Deep-Palm: 0.95
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Liver
Specificity: 0.714
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Liver tissue (Mass)
Specificity: 0.286
2/8 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.