Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99JW4 | Lims1 | LIM and senescent cell antigen-like-containing … | Mus musculus (Mouse) | 325 aa |
Protein Details: Q99JW4 (Lims1)
Protein Information
| Accession | Q99JW4 |
|---|---|
| Protein Names | LIM and senescent cell antigen-like-containing domain protein 1 (Particularly interesting new Cys-His protein 1) (PINCH-1) |
| Gene Symbol | Lims1 |
| Organism | Mus musculus (Mouse) |
| Length | 325 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MANALASATC11ERCKGGFAPA21EKIVNSNGEL31YHEQCFVCAQ41CFQQFPEGLF
51-10051YEFEGRKYCE61HDFQMLFAPC71CHQCGEFIIG81RVIKAMNNSW91HPECFRCDLC
101-150101QEVLADIGFV111KNAGRHLCRP121CHNREKARGL131GKYICQKCHA141IIDEQPLIFK
151-200151NDPYHPDHFN161CANCGKELTA171DARELKGELY181CLPCHDKMGV191PICGACRRPI
201-250201EGRVVNAMGK211QWHVEHFVCA221KCEKPFLGHR231HYERKGLAYC241ETHYNQLFGD
251-300251VCFHCNRVIE261GDVVSALNKA271WCVSCFACST281CNTKLTLKNK291FVEFDMKPVC
301-325301KKCYEKFPLE311LKKRLKKLSE321TLGRK
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 10 | Cysteine Rich Protein Glucocorticoid receptor-like (DNA-binding domain) | - | - |
Deep-Palm: 0.04
|
|
| 13 | Zinc finger, LIM-type Cysteine Rich Protein Glucocorticoid receptor-like (DNA-binding domain) | - | - |
Deep-Palm: 0.20
|
|
| 35 | Cysteine Rich Protein Zinc finger, LIM-type LIM and senescent cell antigen-like-containing domain protein 1-4-like LIMS1/2-like, LIM domain 1 Glucocorticoid receptor-like (DNA-binding domain) | - | - |
Deep-Palm: 0.12
|
|
| 38 | Cysteine Rich Protein Zinc finger, LIM-type LIM and senescent cell antigen-like-containing domain protein 1-4-like LIMS1/2-like, LIM domain 1 Glucocorticoid receptor-like (DNA-binding domain) | - | - |
Deep-Palm: 0.03
|
|
| 41 | Cysteine Rich Protein Zinc finger, LIM-type LIM and senescent cell antigen-like-containing domain protein 1-4-like LIMS1/2-like, LIM domain 1 Glucocorticoid receptor-like (DNA-binding domain) | - | - |
Deep-Palm: 0.03
|
|
| 59 | - | - | - |
Deep-Palm: 0.03
|
|
| 70 | - | - | - |
Deep-Palm: 0.04
|
|
| 71 | - | - | - |
Deep-Palm: 0.02
|
|
| 74 | - | - | - |
Deep-Palm: 0.02
|
|
| 94 | SWISSPALM DBPTM CYSMODDB | LIM domain |
Liver
(28526873)
| - |
Deep-Palm: 0.35
|
| 97 | - | - | - |
Deep-Palm: 0.27
|
|
| 100 | - | - | - |
Deep-Palm: 0.23
|
|
| 118 | - | - | - |
Deep-Palm: 0.71
|
|
| 121 | - | - | - |
Deep-Palm: 0.52
|
|
| 135 | - | - | - |
Deep-Palm: 0.19
|
|
| 138 | - | - | - |
Deep-Palm: 0.40
|
|
| 161 | - | - | - |
Deep-Palm: 0.49
|
|
| 164 | - | - | - |
Deep-Palm: 0.57
|
|
| 181 | - | - | - |
Deep-Palm: 0.75
|
|
| 184 | - | - | - |
Deep-Palm: 0.86
|
|
| 193 | - | - | - |
Deep-Palm: 0.31
|
|
| 196 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.71
|
|
| 219 | - | - | - |
Deep-Palm: 0.16
|
|
| 222 | - | - | - |
Deep-Palm: 0.29
|
|
| 240 | - | - | - |
Deep-Palm: 0.04
|
|
| 252 | - | - | - |
Deep-Palm: 0.03
|
|
| 255 | - | - | - |
Deep-Palm: 0.06
|
|
| 272 | - | - | - |
Deep-Palm: 0.88
|
|
| 275 | - | - | - |
Deep-Palm: 0.87
|
|
| 278 | - | - | - |
Deep-Palm: 0.83
|
|
| 281 | - | - | - |
Deep-Palm: 0.46
|
|
| 300 | SWISSPALM DBPTM CYSMODDB | LIM domain |
Liver
(28526873)
| - |
Deep-Palm: 0.73
|
| 303 | - | - | - |
Deep-Palm: 0.92
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
3
Liver
Specificity: 0.750
3/3 (100.0%)
1
Brain
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.