Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99JY4 | Trabd | TraB domain-containing protein | Mus musculus (Mouse) | 376 aa |
Protein Details: Q99JY4 (Trabd)
Protein Information
| Accession | Q99JY4 |
|---|---|
| Protein Names | TraB domain-containing protein |
| Gene Symbol | Trabd |
| Organism | Mus musculus (Mouse) |
| Length | 376 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 35477839 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MEGEEKPAQE11ADVEPVVTAG21TSEAVPRVLA31GDPQNISDVD41AFNLLLEMKL
51-10051KRRRERPNLP61RTVTQLVAED71GSRVYVVGTA81HFSDDSKRDV91VKTIREVQPD
101-150101VVVVELCQYR111VSMLKMDERT121LLREAKEVSL131EKLQQAVRQN141GLMSGLMQML
151-200151LLKVSAHITE161QLGMAPGGEF171REAFKEASKV181PFCKFHLGDR191PIPVTFKRAI
201-250201AALSFWQKVK211LAWGLCFLSD221PISKDDVERC231KQKDLLEQMM241AEMIGEFPDL
251-300251HRTIVSERDV261YLTYMLRQAA271RRLELPRASD281AEPRKCVPSV291VVGVVGMGHV
301-350301PGIEKNWSTD311LNIQEIMTVP321PPSISGRVSR331VAVKAAFFGL341LGYSLYWMGR
351-376351RTLNLVLSLP361AAQFCLQRVS371EARPGR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 107 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.92
|
|
| 183 | - | - | - |
GPS-Palm: 0.73
Deep-Palm: 0.91
|
|
| 216 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.96
|
| 230 | - | - | - |
Deep-Palm: 0.68
|
|
| 286 | - | - | - |
Deep-Palm: 0.95
|
|
| 365 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.64
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Testis
Specificity: 0.667
2/2 (100.0%)
1
Liver
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.