Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99KR7 | Ppif | Peptidyl-prolyl cis-trans isomerase F, mitochondrial … | Mus musculus (Mouse) | 206 aa |
Protein Details: Q99KR7 (Ppif)
Protein Information
| Accession | Q99KR7 |
|---|---|
| Protein Names | Peptidyl-prolyl cis-trans isomerase F, mitochondrial (PPIase F) (EC 5.2.1.8) (Cyclophilin D) (CyP-D) (CypD) (Cyclophilin F) (Rotamase F) |
| Gene Symbol | Ppif |
| Organism | Mus musculus (Mouse) |
| Length | 206 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLALRCGPRL11LGLLSGPRSA21PLLLSATRTC31SDGGARGANS41SSGNPLVYLD
51-10051VGADGQPLGR61VVLELKADVV71PKTAENFRAL81CTGEKGFGYK91GSTFHRVIPA
101-150101FMCQAGDFTN111HNGTGGRSIY121GSRFPDENFT131LKHVGPGVLS141MANAGPNTNG
151-200151SQFFICTIKT161DWLDGKHVVF171GHVKEGMDVV181KKIESFGSKS191GKTSKKIVIT
201-206201DCGQLS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 6 | - | - | - |
Deep-Palm: 0.27
|
|
| 30 | - | - | - |
Deep-Palm: 0.98
|
|
| 81 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.97
|
|
| 103 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.33
|
|
| 156 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.19
|
|
| 202 | SWISSPALM | - | - |
Brain
(35358180)
|
GPS-Palm: 0.97
Deep-Palm: 0.04
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
3
Liver
Specificity: 0.130
3/3 (100.0%)
1
Brain
Specificity: 0.043
1/1 (100.0%)
1
Testis
Specificity: 0.043
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 0.783
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.