Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99LF4 | Rtcb | RNA-splicing ligase RTCB (EC 6.5.1.8) … | Mus musculus (Mouse) | 505 aa |
Protein Details: Q99LF4 (Rtcb)
Protein Information
| Accession | Q99LF4 |
|---|---|
| Protein Names | RNA-splicing ligase RTCB (EC 6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) (Focal adhesion-associated protein) (FAAP) (RNA 2',3'-cyclic phosphate and 5'-OH ligase) |
| Gene Symbol | Rtcb |
| Organism | Mus musculus (Mouse) |
| Length | 505 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSRNYNDELQ11FLDKINKNCW21RIKKGFVPNM31QVEGVFYVND41ALEKLMFEEL
51-10051RNACRGGGVG61GFLPAMKQIG71NVAALPGIVH81RSIGLPDVHS91GYGFAIGNMA
101-150101AFDMNDPEAV111VSPGGVGFDI121NCGVRLLRTN131LDESDVQPVK141EQLAQAMFDH
151-200151IPVGVGSKGV161IPMNAKDLEE171ALEMGVDWSL181REGYAWAEDK191EHCEEYGRML
201-250201QADPNKVSPR211AKKRGLPQLG221TLGAGNHYAE231IQVVDEIFNE241YAAKKMGIDH
251-300251KGQVCVMIHS261GSRGLGHQVA271TDALVAMEKA281MKRDKIIVND291RQLACARIAS
301-350301PEGQDYLKGM311AAAGNYAWVN321RSSMTFLTRQ331AFAKVFNTTP341DDLDLHVIYD
351-400351VSHNIAKVEQ361HVVDGKERTL371LVHRKGSTRA381FPPHHPLIAV391DYQLTGQPVL
401-450401IGGTMGTCSY411VLTGTEQGMT421ETFGTTCHGA431GRALSRAKSR441RNLDFQDVLD
451-500451KLADMGIAIR461VASPKLVMEE471APESYKNVTD481VVNTCHDAGI491SKKAIKLRPI
501-505501AVIKG
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 19 | - | - | - |
Deep-Palm: 0.13
|
|
| 54 | - | - | - |
Deep-Palm: 0.96
|
|
| 122 | - | - | - |
Deep-Palm: 0.94
|
|
| 193 | - | - | - |
Deep-Palm: 0.51
|
|
| 255 | - | - | - |
Deep-Palm: 0.65
|
|
| 295 | - | - | - |
Deep-Palm: 0.90
|
|
| 408 | - | - | - |
Deep-Palm: 0.85
|
|
| 427 | - | - | - |
Deep-Palm: 0.93
|
|
| 485 | SWISSPALM DBPTM CYSMODDB | tRNA-splicing ligase RtcB |
Liver
(28526873)
MLE
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.89
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
6
Liver
Specificity: 0.375
6/6 (100.0%)
2
Brain
Specificity: 0.125
2/2 (100.0%)
2
Testis
Specificity: 0.125
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 0.375
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.