Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q99MN9 | Pccb | Propionyl-CoA carboxylase beta chain, mitochondrial … | Mus musculus (Mouse) | 541 aa |
Protein Details: Q99MN9 (Pccb)
Protein Information
| Accession | Q99MN9 |
|---|---|
| Protein Names | Propionyl-CoA carboxylase beta chain, mitochondrial (PCCase subunit beta) (EC 6.4.1.3) (Propanoyl-CoA:carbon dioxide ligase subunit beta) |
| Gene Symbol | Pccb |
| Organism | Mus musculus (Mouse) |
| Length | 541 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAAAIRIRAV11AAGARLSVLN21CGLGITTRGL31CSQPVSVKER41IDNKRHAALL
51-10051GGGQRRIDAQ61HKRGKLTARE71RISLLLDPGS81FMESDMFVEH91RCADFGMAAD
101-150101KNKFPGDSVV111TGRGRINGRL121VYVFSQDFTV131FGGSLSGAHA141QKICKIMDQA
151-200151ITVGAPVIGL161NDSGGARIQE171GVESLAGYAD181IFLRNVTASG191VIPQISLIMG
201-250201PCAGGAVYSP211ALTDFTFMVK221DTSYLFITGP231EVVKSVTNED241VTQEQLGGAK
251-300251THTTVSGVAH261RAFDNDVDAL271CNLREFFNFL281PLSSQDPAPI291RECHDPSDRL
301-350301VPELDTVVPL311ESSKAYNMLD321IIHAVIDERE331FFEIMPSYAK341NIVVGFARMN
351-400351GRTVGIVGNQ361PNVASGCLDI371NSSVKGARFV381RFCDAFNIPL391ITFVDVPGFL
401-450401PGTAQEYGGI411IRHGAKLLYA421FAEATVPKIT431VITRKAYGGA441YDVMSSKHLL
451-500451GDTNYAWPTA461EIAVMGAKGA471VEIIFKGHQD481VEAAQAEYVE491KFANPFPAAV
501-541501RGFVDDIIQP511SSTRARICCD521LEVLASKKVH531RPWRKHANIP541L
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 21 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 31 | SWISSPALM DBPTM CYSMODDB | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.92
|
| 92 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.09
|
|
| 144 | - | - | - |
Deep-Palm: 0.89
|
|
| 202 | - | - | - |
Deep-Palm: 0.89
|
|
| 271 | SWISSPALM DBPTM CYSMODDB | Carboxyl transferase domain |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.93
|
| 293 | - | - | - |
Deep-Palm: 0.82
|
|
| 367 | SWISSPALM DBPTM CYSMODDB | Carboxyl transferase domain |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.97
|
| 383 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.83
|
|
| 518 | Carboxyl transferase domain |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.91
|
|
| 519 | Carboxyl transferase domain |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.92
Deep-Palm: 0.83
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
6
Liver
Specificity: 0.214
6/6 (100.0%)
4
Brain
Specificity: 0.143
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 0.643
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.