Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9BVA1 | TUBB2B | Tubulin beta-2B chain | Homo sapiens (Human) | 445 aa |
Protein Details: Q9BVA1 (TUBB2B)
Protein Information
| Accession | Q9BVA1 |
|---|---|
| Protein Names | Tubulin beta-2B chain |
| Gene Symbol | TUBB2B |
| Organism | Homo sapiens (Human) |
| Length | 445 aa |
| Isoforms | No isoforms |
| Related PMIDs | 21076176 29733200 31251020 36430497 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MREIVHIQAG11QCGNQIGAKF21WEVISDEHGI31DPTGSYHGDS41DLQLERINVY
51-10051YNEATGNKYV61PRAILVDLEP71GTMDSVRSGP81FGQIFRPDNF91VFGQSGAGNN
101-150101WAKGHYTEGA111ELVDSVLDVV121RKESESCDCL131QGFQLTHSLG141GGTGSGMGTL
151-200151LISKIREEYP161DRIMNTFSVM171PSPKVSDTVV181EPYNATLSVH191QLVENTDETY
201-250201CIDNEALYDI211CFRTLKLTTP221TYGDLNHLVS231ATMSGVTTCL241RFPGQLNADL
251-300251RKLAVNMVPF261PRLHFFMPGF271APLTSRGSQQ281YRALTVPELT291QQMFDSKNMM
301-350301AACDPRHGRY311LTVAAIFRGR321MSMKEVDEQM331LNVQNKNSSY341FVEWIPNNVK
351-400351TAVCDIPPRG361LKMSATFIGN371STAIQELFKR381ISEQFTAMFR391RKAFLHWYTG
401-445401EGMDEMEFTE411AESNMNDLVS421EYQQYQDATA431DEQGEFEEEE441GEDEA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 12 | SWISSPALM DBPTM CYSMODDB | OS01G0282866 PROTEIN Tubulin/FtsZ, GTPase domain superfamily Tubulin/FtsZ family GTPase domain |
SW480 cell line
(26865113)
| - |
Deep-Palm: 0.03
|
| 127 | - | - |
cerebral cortex
(36430497)
|
Deep-Palm: 0.82
|
|
| 129 | - | - |
cerebral cortex
(36430497)
Unknown
(32651440)
|
Deep-Palm: 0.88
|
|
| 201 | - | - | - |
Deep-Palm: 0.13
|
|
| 211 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.16
|
|
| 239 | - | - |
Unknown
(32651440)
cerebral cortex
(36430497)
|
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 303 | - |
SW480 cell line
(26865113)
|
Unknown
(32651440)
cerebral cortex
(36430497)
|
GPS-Palm: 0.92
Deep-Palm: 0.56
|
|
| 354 | SWISSPALM DBPTM CYSMODDB | Tubulin C-terminal domain |
SW480 cell line
(26865113)
|
cerebral cortex
(36430497)
|
GPS-Palm: 0.92
Deep-Palm: 0.68
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.375
3
LNCaP
Specificity: 0.250
3/3 (100.0%)
2
HAP1 cell
Specificity: 0.167
2/2 (100.0%)
1
Jurkat T cell
Specificity: 0.083
1/1 (100.0%)
1
293T cell
Specificity: 0.083
1/1 (100.0%)
1
cerebral cortex
Specificity: 0.083
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
Cerebral Cortex (Mass)
Specificity: 0.333
4/4 (100.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 13 | G → C | 0.002747 | SNP | Missense Mutation | LIHC |
| 21 | W → C | 0.002294 | SNP | Missense Mutation | OV |
| 162 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 162 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 211 | C → C | 0.002427 | SNP | Silent | BLCA |
| 251 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 262 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 391 | R → C | 0.002288 | SNP | Missense Mutation | STAD |