Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9CQA3 | Sdhb | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, … | Mus musculus (Mouse) | 282 aa |
Protein Details: Q9CQA3 (Sdhb)
Protein Information
| Accession | Q9CQA3 |
|---|---|
| Protein Names | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (EC 1.3.5.1) (Iron-sulfur subunit of complex II) (Ip) (Malate dehydrogenase [quinone] iron-sulfur subunit) (EC 1.1.5.-) |
| Gene Symbol | Sdhb |
| Organism | Mus musculus (Mouse) |
| Length | 282 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAATVGVSLK11RGFPAAVLGR21VGLQFQACRG31AQTAAAAAPR41IKKFAIYRWD
51-10051PDKTGDKPRM61QTYEVDLNKC71GPMVLDALIK81IKNEVDSTLT91FRRSCREGIC
101-150101GSCAMNINGG111NTLACTRRID121TDLSKVSKIY131PLPHMYVIKD141LVPDLSNFYA
151-200151QYKSIEPYLK161KKDESQEGKQ171QYLQSIEDRE181KLDGLYECIL191CACCSTSCPS
201-250201YWWNGDKYLG211PAVLMQAYRW221MIDSRDDFTE231ERLAKLQDPF241SVYRCHTIMN
251-282251CTQTCPKGLN261PGKAIAEIKK271MMATYKEKRA281LA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 28 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 70 | SWISSPALM DBPTM CYSMODDB | 2Fe-2S iron-sulfur cluster binding domain |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.93
|
| 95 | - | - | - |
Deep-Palm: 0.46
|
|
| 100 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.37
|
|
| 103 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.32
|
|
| 115 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.90
Deep-Palm: 0.32
|
|
| 188 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.36
|
|
| 191 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.24
|
|
| 193 | - | - | - |
Deep-Palm: 0.16
|
|
| 194 | - | - | - |
Deep-Palm: 0.16
|
|
| 198 | - | - | - |
Deep-Palm: 0.33
|
|
| 245 | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.70
|
|
| 251 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.63
|
| 255 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.72
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.545
6
Liver
Specificity: 0.167
6/6 (100.0%)
4
Brain
Specificity: 0.111
4/4 (100.0%)
1
Testis
Specificity: 0.028
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
25
Brain tissue (Mass)
Specificity: 0.694
25/56 (44.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.