Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9CQE8 | RTRAF | tRNA-splicing ligase complex subunit RTRAF … | Mus musculus (Mouse) | 244 aa |
Protein Details: Q9CQE8 (RTRAF)
Protein Information
| Accession | Q9CQE8 |
|---|---|
| Protein Names | tRNA-splicing ligase complex subunit RTRAF (RNA transcription, translation and transport factor protein) |
| Gene Symbol | RTRAF |
| Organism | Mus musculus (Mouse) |
| Length | 244 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MFRRKLTALD11YHNPSGFNCK21DETEFRNFIV31WLEDQKIRHY41KIEDRGNLRN
51-10051IHSSDWPKFF61EKYLKDVNCP71FKIQDRQEAI81DWLLGLAVRL91EYGDNAEKYK
101-150101DLVPDNRKNT111DNAAKNAEPL121INLDVNNPDF131KAGVMALANL141LQIQRHDDYL
151-200151VMLKAIRILV161QERLTQDAVA171KANQTKEGLP181VALEKHILGF191DTGDAVLNEA
201-244201AQILRLLHIE211ELRELQTKIN221EAIVAVQAII231ADPKTDHRLG241KVGR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 19 | SWISSPALM DBPTM CYSMODDB | RNA transcription, translation and transport factor protein RNA transcription translation and transport factor protein |
Liver
(28526873)
| - |
Deep-Palm: 0.59
|
| 69 | - | - | - |
Deep-Palm: 0.60
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
Liver
Specificity: 1.000
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.