Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9CXL1 | Tmem50a | Transmembrane protein 50A (Small membrane … | Mus musculus (Mouse) | 157 aa |
Protein Details: Q9CXL1 (Tmem50a)
Protein Information
| Accession | Q9CXL1 |
|---|---|
| Protein Names | Transmembrane protein 50A (Small membrane protein 1) |
| Gene Symbol | Tmem50a |
| Organism | Mus musculus (Mouse) |
| Length | 157 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29217618 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSGFLEGSRC11SECMDWGEKR21NTIASIAAGV31LFFTGWWIII41DAAVMYPRMD
51-10051QFNHSYHTCG61VIATIAFLMI71NAVSNGQVRG81DSYSEGCLGQ91TGARIWLFIG
101-150101FMLAFGSLIA111SMWILFGGYV121AKEKDVVYPG131IAVFFQNAFI141FFGGLVFKFG
151-157151RTEDLWQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 10 | - | - | - |
Deep-Palm: 0.03
|
|
| 13 | SWISSPALM DBPTM CYSMODDB | Uncharacterised protein family UPF0220 Uncharacterised protein family (UPF0220) |
Forebrain
(28680068)
| - |
Deep-Palm: 0.09
|
| 59 | - | - | - |
Deep-Palm: 0.02
|
|
| 87 | SWISSPALM DBPTM CYSMODDB | Uncharacterised protein family (UPF0220) |
Forebrain
(28680068)
Liver
(28526873)
| - |
Deep-Palm: 0.94
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.833
5
Liver
Specificity: 0.833
5/5 (100.0%)
1
Raw 264.7
Specificity: 0.167
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.