Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9CZN7 | Shmt2 | Serine hydroxymethyltransferase, mitochondrial (SHMT) (EC … | Mus musculus (Mouse) | 504 aa |
Protein Details: Q9CZN7 (Shmt2)
Protein Information
| Accession | Q9CZN7 |
|---|---|
| Protein Names | Serine hydroxymethyltransferase, mitochondrial (SHMT) (EC 2.1.2.1) (Glycine hydroxymethyltransferase) (Serine methylase) |
| Gene Symbol | Shmt2 |
| Organism | Mus musculus (Mouse) |
| Length | 504 aa |
| Isoforms | No isoforms |
| Related PMIDs | 34884899 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVSFSLLRTT11RPLQRCGQLV21CMAARAQHSK31VAQTQAGEAA41GGWTGQESLS
51-10051DSDPEMWELL61QREKDRQCRG71LELIASENFC81SRAALEALGS91CLNNKYSEGY
101-150101PGKRYYGGAE111VVDEIELLCQ121RRALEAFDLD131PAQWGVNVQP141YSGSPANLAA
151-200151YTALLQPHDR161IMGLDLPDGG171HLTHGYMSDV181KRISATSIFF191ESMPYKLNPQ
201-250201TGLIDYDQLA211LTARLFRPRL221IIAGTSAYAR231LIDYARMREV241CDEVRAHLLA
251-300251DMAHISGLVA261AKVIPSPFKY271ADVVTTTTHK281TLRGARSGLI291FYRKGVRTVD
301-350301PKTGKEIPYT311FEDRINFAVF321PSLQGGPHNH331AIAAVAVALK341QACTPMFREY
351-400351SLQVLRNAQA361MADALLKRGY371SLVSGGTDTH381LVLVDLRPKG391LDGARAERVL
401-450401ELVSITANKN411TCPGDRSAIT421PGGLRLGAPA431LTSRQFREDD441FRRVVDFIDE
451-500451GVNIGLEVKR461KTAKLQDFKS471FLLKDPETSQ481RLANLRQQVE491QFARGFPMPG
501-504501FDER
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 16 | - | - | - |
Deep-Palm: 0.97
|
|
| 21 | - | - | - |
Deep-Palm: 0.97
|
|
| 68 | - | - | - |
Deep-Palm: 0.93
|
|
| 80 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.98
|
|
| 91 | SWISSPALM DBPTM CYSMODDB | Serine hydroxymethyltransferase |
liver
(26165157)
MLE
(39008777)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.96
|
| 119 | - | - | - |
Deep-Palm: 0.96
|
|
| 241 | - | - | - |
Deep-Palm: 0.90
|
|
| 343 | - | - | - |
Deep-Palm: 0.84
|
|
| 412 | - | - | - |
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
4
Liver
Specificity: 0.667
4/4 (100.0%)
2
Testis
Specificity: 0.333
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.