Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D0N8 | Tmem88 | Transmembrane protein 88 | Mus musculus (Mouse) | 159 aa |
Protein Details: Q9D0N8 (Tmem88)
Protein Information
| Accession | Q9D0N8 |
|---|---|
| Protein Names | Transmembrane protein 88 |
| Gene Symbol | Tmem88 |
| Organism | Mus musculus (Mouse) |
| Length | 159 aa |
| Isoforms | No isoforms |
| Related PMIDs | 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAEVPGAQRP11VLAGGPEPRD21PLDCWACAVL31VTAQNLLVAV41FNLLLLALVL
51-10051GTILLPAVIM61LGFGFLCHSQ71FLRSQAPLCT81SHLRDPGFTA91LLVTGFLLLV
101-150101PLLVLALATY111RRLCLRLRLA121DCLVPYSRAL131YRRRRIPQPK141QIPVSPGSRS
151-159151VPTPGKVWV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 24 | - | - | - |
Deep-Palm: 0.97
|
|
| 27 | - | - | - |
Deep-Palm: 0.94
|
|
| 67 | - | - | - |
Deep-Palm: 0.89
|
|
| 79 | - | - | - |
Deep-Palm: 0.92
|
|
| 114 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.99
|
|
| 122 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.96
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Liver
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.