Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D1M0 | Sec13 | Protein SEC13 homolog (GATOR2 complex … | Mus musculus (Mouse) | 322 aa |
Protein Details: Q9D1M0 (Sec13)
Protein Information
| Accession | Q9D1M0 |
|---|---|
| Protein Names | Protein SEC13 homolog (GATOR2 complex protein SEC13) (SEC13-like protein 1) (SEC13-related protein) |
| Gene Symbol | Sec13 |
| Organism | Mus musculus (Mouse) |
| Length | 322 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVSVMNTVDT11SHEDMIHDAQ21MDYYGTRLAT31CSSDRSVKIF41DVRNGGQILI
51-10051ADLRGHEGPV61WQVAWAHPMY71GNILASCSYD81RKVIIWKEEN91GTWEKTHEHS
101-150101GHDSSVNSVC111WAPHDYGLIL121ACGSSDGAIS131LLTYTGEGQW141EVKKINNAHT
151-200151IGCNAVSWAP161AVVPGSLIDQ171PSGQKPNYIK181KFASGGCDNL191IKLWREEEDG
201-250201QWKEEQKLEA211HSDWVRDVAW221APSIGLPTST231IASCSQDGRV241FIWTCDDASG
251-300251NMWSPKLLHK261FNDVVWHVSW271SITANILAVS281GGDNKVTLWK291ESVDGQWVCI
301-322301SDVNKGQGSV311SASITEGQQN321EQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 31 | Sec13/Seh1 family WD40/YVTN repeat-like-containing domain superfamily WD40 repeat WD40-repeat-containing domain superfamily | - | - |
Deep-Palm: 0.54
|
|
| 77 | - | - | - |
Deep-Palm: 0.18
|
|
| 110 | - | - | - |
Deep-Palm: 0.16
|
|
| 122 | - | - | - |
Deep-Palm: 0.66
|
|
| 153 | - | - | - |
Deep-Palm: 0.42
|
|
| 187 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.40
|
|
| 234 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.45
|
| 245 | - | - |
Liver
(34884899)
|
Deep-Palm: 0.10
|
|
| 299 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.85
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.714
5
Liver
Specificity: 0.333
5/5 (100.0%)
2
Testis
Specificity: 0.133
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
8
Brain tissue (Mass)
Specificity: 0.533
8/56 (14.3%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.