Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D1P4 | Chordc1 | Cysteine and histidine-rich domain-containing protein … | Mus musculus (Mouse) | 331 aa |
Protein Details: Q9D1P4 (Chordc1)
Protein Information
| Accession | Q9D1P4 |
|---|---|
| Protein Names | Cysteine and histidine-rich domain-containing protein 1 (CHORD domain-containing protein 1) (CHORD-containing protein 1) (Chp-1) (Protein morgana) |
| Gene Symbol | Chordc1 |
| Organism | Mus musculus (Mouse) |
| Length | 331 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MALLCYNRGC11GQRFDPEANS21DDACTYHPGV31PVFHDALKGW41SCCKRRTTDF
51-10051SDFLSIVGCT61KGRHNSEKPP71EPVKPEVKTT81EKKELSELKP91KFQEHIIQAP
101-150101KPVEAIKRPS111PDEPMTNLEL121KISASLKQAL131DKLKLSSGSE141EDKKEEDSDE
151-200151IKIGTSCKNG161GCSKTYQGLQ171SLEEVCVYHS181GVPIFHEGMK191YWSCCRRKTS
201-250201DFNTFLAQEG211CTRGKHVWTK221KDAGKKVVPC231RHDWHQTGGE241VTISVYAKNS
251-300251LPELSQVEAN261STLLNVHIVF271EGEKEFHQNV281KLWGVIDVKR291SYVTMTATKI
301-331301EITMRKAEPM311QWASLELPTT321KKQEKQKDIA331D
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 5 | Cysteine and histidine-rich domain-containing protein 1 CHORD domain | - |
Liver
(37925639)
Brain
(35358180)
|
GPS-Palm: 0.97
Deep-Palm: 0.02
|
|
| 10 | Cysteine and histidine-rich domain-containing protein 1 CHORD domain | - | - |
Deep-Palm: 0.02
|
|
| 24 | SWISSPALM DBPTM CYSMODDB | Cysteine and histidine-rich domain-containing protein 1 CHORD domain CHORD |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.31
|
| 42 | Cysteine and histidine-rich domain-containing protein 1 CHORD domain | - | - |
Deep-Palm: 0.59
|
|
| 43 | Cysteine and histidine-rich domain-containing protein 1 CHORD domain | - | - |
Deep-Palm: 0.71
|
|
| 59 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.85
|
|
| 157 | - | - | - |
Deep-Palm: 0.76
|
|
| 162 | - | - | - |
Deep-Palm: 0.64
|
|
| 176 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.24
|
|
| 194 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.11
|
|
| 195 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.13
|
|
| 211 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.83
|
|
| 230 | - | - | - |
Deep-Palm: 0.36
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.429
3
Liver
Specificity: 0.103
3/3 (100.0%)
2
Brain
Specificity: 0.069
2/2 (100.0%)
2
Testis
Specificity: 0.069
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
22
Brain tissue (Mass)
Specificity: 0.759
22/56 (39.3%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.