Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D1X9 | Tmem50b | Transmembrane protein 50B | Mus musculus (Mouse) | 158 aa |
Protein Details: Q9D1X9 (Tmem50b)
Protein Information
| Accession | Q9D1X9 |
|---|---|
| Protein Names | Transmembrane protein 50B |
| Gene Symbol | Tmem50b |
| Organism | Mus musculus (Mouse) |
| Length | 158 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31311849 31772009 34200797 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAGFLDNFRW11PECECIDWSE21RRNTVASVVA31GILFFTGWWI41MIDAAVVYPK
51-10051PEQLNHAFHT61CGVFSTLAFF71MINAVSNAQV81RGDSYESGCL91GRTGARVWLF
101-150101IGFMLMFGSL111IASMWILFGA121YVTQNIDVYP131GLAVFFQNAL141IFFSTLIYKF
151-158151GRTEELWA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 13 | SWISSPALM DBPTM CYSMODDB | Uncharacterised protein family UPF0220 Uncharacterised protein family (UPF0220) |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.90
Deep-Palm: 0.04
|
| 15 | SWISSPALM DBPTM CYSMODDB | Uncharacterised protein family UPF0220 Uncharacterised protein family (UPF0220) |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.17
|
| 61 | - | - | - |
Deep-Palm: 0.11
|
|
| 89 | SWISSPALM DBPTM CYSMODDB | Uncharacterised protein family (UPF0220) |
Forebrain
(28680068)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.333
3
Brain
Specificity: 0.136
3/3 (100.0%)
3
Liver
Specificity: 0.136
3/3 (100.0%)
2
Testis
Specificity: 0.091
2/2 (100.0%)
1
NSC
Specificity: 0.045
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
13
Brain tissue (Mass)
Specificity: 0.591
13/56 (23.2%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.