Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D428 | GOLGA7B | Golgin subfamily A member 7B | Mus musculus (Mouse) | 167 aa |
Protein Details: Q9D428 (GOLGA7B)
Protein Information
| Accession | Q9D428 |
|---|---|
| Protein Names | Golgin subfamily A member 7B |
| Gene Symbol | GOLGA7B |
| Organism | Mus musculus (Mouse) |
| Length | 167 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 35477839 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MATEVHNLQE11LRRSASLATK21VFIQRDYSDG31TICQFQTKFP41PELDSRIERQ
51-10051LFEETVKTLN61GFYAEAEKIG71GSSYLEGCLA81CATAYFIFLC91METHYEKVLK
101-150101KISRYIQEQN111EKVFAPRGLL121LTDPVERGMR131VIEISIYEDR141CSSGSSSSGS
151-167151SSGSGSSSAG161GGGAGAR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 33 | SWISSPALM DBPTM CYSMODDB | Ras-specific palmitoyltransferase complex Golgin subfamily A member 7/ERF4 family Golgin subfamily A member 7/ERF4 |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.64
|
| 78 | - | - | - |
Deep-Palm: 0.80
|
|
| 81 | - | - | - |
Deep-Palm: 0.32
|
|
| 90 | - | - | - |
Deep-Palm: 0.24
|
|
| 141 | - | - | - |
Deep-Palm: 0.84
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Testis
Specificity: 0.222
2/2 (100.0%)
1
Brain
Specificity: 0.111
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 0.667
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 63 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 81 | C → C | 0.002288 | SNP | Silent | STAD |
| 81 | C → C | 0.002020 | SNP | Silent | PRAD |
| 90 | C → Y | 0.002506 | SNP | Missense Mutation | COAD |
| 104 | R → C | 0.002288 | SNP | Missense Mutation | STAD |