Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D662 | Sec23b | Protein transport protein Sec23B (SEC23-related … | Mus musculus (Mouse) | 767 aa |
Protein Details: Q9D662 (Sec23b)
Protein Information
| Accession | Q9D662 |
|---|---|
| Protein Names | Protein transport protein Sec23B (SEC23-related protein B) |
| Gene Symbol | Sec23b |
| Organism | Mus musculus (Mouse) |
| Length | 767 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MATYLEFIQQ11NEERDGVRFS21WNVWPSSRLE31ATRMVVPLAC41LLTPLKERPD
51-10051LPPVQYEPVL61CSRPTCKAIL71NPLCQVDYRA81KLWACNFCFQ91RNQFPPAYAG
101-150101ISEVNQPAEL111MPQFSTIEYM121IQRGARSPLI131FLYVVDTCLE141EDDLQALKES
151-200151LQMSLSLLPP161DALVGLITFG171RMVQVHELSC181EGISKSYVFR191GTKDLTAKQI
201-250201QEMLGLTKSA211MPVQQARPAQ221PQEQPFVSSR231FLQPIHKIDM241NLTDLLGELQ
251-300251RDPWPVTQGK261RPLRSTGVAL271SIAVGLLEGT281FPNTGARIML291FTGGPPTQGP
301-350301GMVVGDELKT311PIRSWHDIEK321DNARFMKKAT331KHYEMLANRT341ATNGHCIDIY
351-400351ACALDQTGLL361EMKCCPNLTG371GHMVMGDSFN381TSLFKQTFQR391IFSKDFNGDF
401-450401RMAFGATLDV411KTSRELKIAG421AIGPCVSLNV431KGPCVSENEL441GVGGTSQWKI
451-500451CGLDPSSTLG461IYFEVVNQHN471APVPQGGRGA481IQFVTQYQHS491STQKRIRVTT
501-550501IARNWADAQS511QLRHIEAAFD521QEAAAVLMAR531LGVFRAESEE541GPDVLRWLDR
551-600551QLIRLCQKFG561QYNKEDPTSF571RLSDSFSLYP581QFMFHLRRSP591FLQVFNNSPD
601-650601ESSYYRHHFA611RQDLTQSLIM621IQPILYSYSF631HGPPEPVLLD641SSSILADRIL
651-700651LMDTFFQIVI661YLGETIAQWR671KAGYQDMPEY681ENFKHLLQAP691LDDAQEILQA
701-750701RFPMPRYINT711EHGGSQARFL721LSKVNPSQTH731NNLYAWGQET741GAPILTDDVS
751-767751LQVFMDHLKK761LAVSSAS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 40 | SWISSPALM DBPTM CYSMODDB | Protein transport protein Sec23 beta-sandwich domain of Sec23/24 |
Liver
(28526873)
| - |
GPS-Palm: 0.95
Deep-Palm: 0.98
|
| 61 | - | - | - |
Deep-Palm: 0.92
|
|
| 66 | - | - | - |
Deep-Palm: 0.88
|
|
| 74 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.84
|
|
| 85 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.53
|
|
| 88 | - | - | - |
Deep-Palm: 0.46
|
|
| 138 | - | - | - |
Deep-Palm: 0.89
|
|
| 180 | - | - | - |
Deep-Palm: 0.72
|
|
| 346 | - | - | - |
Deep-Palm: 0.63
|
|
| 352 | - | - | - |
Deep-Palm: 0.15
|
|
| 364 | - | - | - |
Deep-Palm: 0.40
|
|
| 365 | - | - | - |
Deep-Palm: 0.29
|
|
| 425 | - | - | - |
Deep-Palm: 0.92
|
|
| 434 | - | - | - |
Deep-Palm: 0.78
|
|
| 451 | - | - | - |
Deep-Palm: 0.92
|
|
| 556 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.82
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
Liver
Specificity: 1.000
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.