Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D8C2 | Tspan13 | Tetraspanin-13 (Tspan-13) (Transmembrane 4 superfamily … | Mus musculus (Mouse) | 204 aa |
Protein Details: Q9D8C2 (Tspan13)
Protein Information
| Accession | Q9D8C2 |
|---|---|
| Protein Names | Tetraspanin-13 (Tspan-13) (Transmembrane 4 superfamily member 13) |
| Gene Symbol | Tspan13 |
| Organism | Mus musculus (Mouse) |
| Length | 204 aa |
| Isoforms | No isoforms |
| Related PMIDs | 34200797 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVCGGFSCSK11NCLCALNLLY21TLVSLLLIGI31AAWGIGFGLI41SSLRVVGVVI
51-10051AVGIFLFLIA61LVGLIGAVKH71HQVLLFFYMI81ILLLVFIVQF91SVSCACLALN
101-150101REQQGQLLEV111GWNNTASARN121DIQRNLNCCG131FRSYNPNDTC141PASCAKSTQK
151-200151CSSCAPIIGE161YAGEVLRFVG171GIGLFFSFTE181ILGVWLTYRY191RNQKDPRANP
201-204201SAFL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 3 | - |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.97
Deep-Palm: 0.01
|
|
| 8 | - |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.94
Deep-Palm: 0.02
|
|
| 12 | - | - | - |
Deep-Palm: 0.10
|
|
| 14 | - | - | - |
Deep-Palm: 0.94
|
|
| 94 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.77
|
|
| 96 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.92
|
|
| 128 | SWISSPALM DBPTM CYSMODDB | - |
Brain
(34200797)
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.63
|
| 129 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.54
|
|
| 140 | - | - | - |
Deep-Palm: 0.05
|
|
| 144 | - | - | - |
Deep-Palm: 0.08
|
|
| 151 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.46
|
|
| 154 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.79
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.400
2
Brain
Specificity: 0.087
2/2 (100.0%)
2
Testis
Specificity: 0.087
2/2 (100.0%)
1
Liver
Specificity: 0.043
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 0.783
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.