Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9D8E6 | Rpl4 | Large ribosomal subunit protein uL4 … | Mus musculus (Mouse) | 419 aa |
Protein Details: Q9D8E6 (Rpl4)
Protein Information
| Accession | Q9D8E6 |
|---|---|
| Protein Names | Large ribosomal subunit protein uL4 (60S ribosomal protein L4) |
| Gene Symbol | Rpl4 |
| Organism | Mus musculus (Mouse) |
| Length | 419 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MACARPLISV11YSEKGESSGK21NVTLPAVFKA31PIRPDIVNFV41HTNLRKNNRQ
51-10051PYAVSELAGH61QTSAESWGTG71RAVARIPRVR81GGGTHRSGQG91AFGNMCRGGR
101-150101MFAPTKTWRR111WHRRVNTTQK121RYAICSALAA131SALPALVMSK141GHRIEEVPEL
151-200151PLVVEDKVEG161YKKTKEAVQL171LKKLKAWNDI181KKVYASQRMR191AGKGKMRNRR
201-250201RIQRRGPCII211YNEDNGIIKA221FRNIPGITLL231NVSKLNILKL241APGGHVGRFC
251-300251IWTESAFRKL261DELYGTWRKA271ASLKSNYNLP281MHKMMNTDLS291RILKSPEIQR
301-350301ALRAPRKKIH311RRVLKKNPLK321NLRIMLKLNP331YAKTMRRNTI341LRQARNHKLR
351-400351VKKLEAAATA361LATKSEKVVP371EKGTADKKPA381VGKKGKKVDA391KKQKPAGKKV
401-419401VAKKPAEKKP411TTEEKKPAA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 3 | Large ribosomal subunit protein uL4 domain superfamily |
brain
(39008777)
MLE
(39008777)
| - |
GPS-Palm: 0.97
Deep-Palm: 0.04
|
|
| 96 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
liver
(26165157)
|
Brain
(35358180)
|
Deep-Palm: 0.79
|
| 125 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.98
|
| 208 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Liver
(34884899)
Brain
(35358180)
|
Deep-Palm: 0.46
|
| 250 | DBPTM SWISSPALM | - |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
6
Liver
Specificity: 0.240
6/6 (100.0%)
2
Brain
Specificity: 0.080
2/2 (100.0%)
2
Testis
Specificity: 0.080
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
15
Brain tissue (Mass)
Specificity: 0.600
15/56 (26.8%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.