Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q9DAV9 | Tmem38b | Trimeric intracellular cation channel type … | Mus musculus (Mouse) | 292 aa |
Protein Details: Q9DAV9 (Tmem38b)
Protein Information
| Accession | Q9DAV9 |
|---|---|
| Protein Names | Trimeric intracellular cation channel type B (TRIC-B) (TRICB) (Mitsugumin-33B) (Transmembrane protein 38B) |
| Gene Symbol | Tmem38b |
| Organism | Mus musculus (Mouse) |
| Length | 292 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29575903 34884899 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MEYPWDDLTL11AFSRTSMFPF21FDIAHYLVSV31MALKQRPGAV41AAAWNNPLAS
51-10051WLSAMLHCFG61GGILSCMLLA71ESPLKFLTNH81TNILLASSIW91YIVFFCPRDL
101-150101VSQGYSYQPI111QFLAAGMKEV121TRTWKIVGGV131SDANSYYRNA141WIVMIVVGWA
151-200151RGAGGAVVTA161CEQLLKGDWK171PEGDEWLKMS181FPCKITLLGS191IMFTFQHTRH
201-250201LAISKHDLMF211LYTIFLVTIK221VTMMMTKDTA231VTLTPFEDTL241TRMLFGRRQQ
251-292251QQFSSSEKKT261EVKPSSNGSA271SSASKRGAEP281SGGAKRHAKK291ED
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 58 | - | - | - |
Deep-Palm: 0.85
|
|
| 66 | - | - | - |
Deep-Palm: 0.82
|
|
| 96 | - | - | - |
Deep-Palm: 0.51
|
|
| 161 | SWISSPALM DBPTM CYSMODDB | TRIC channel |
Liver
(28526873)
| - |
Deep-Palm: 0.97
|
| 183 | - | - | - |
Deep-Palm: 0.19
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
6
Liver
Specificity: 0.667
6/6 (100.0%)
2
Testis
Specificity: 0.222
2/2 (100.0%)
1
Raw 264.7
Specificity: 0.111
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.